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Releases: metagentools/GraphBin2

GraphBin2 v1.3.3

26 Sep 04:48
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  • Includes minor bug fixes and code formatting.
  • Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.3.2...v1.3.3

GraphBin2 v1.3.2

12 Aug 07:32
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  • Added support to handle MEGAHIT assemblies.
  • Includes minor bug fixes and code formatting.
  • Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.3.1...v1.3.2

GraphBin2 v1.3.1

06 Aug 04:04
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  • Added support to handle original contigs from metaFlye assemblies.
  • Produces individual FASTA files for each bin (including sequences belonging to multiple bins).
  • Includes minor bug fixes and code formatting.
  • Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.2.3...v1.3.1

GraphBin2 v1.2.3

22 Apr 06:59
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  • Includes minor bug fixes.
  • Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.2.2...v1.2.3

GraphBin2 v1.2.2

22 Apr 06:05
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  • Major code refactor to be able to install as a package.
  • Replaced setup.py with pyproject.toml.
  • Now installable with flit instead of pip.
  • Includes minor bug fixes.
  • Added Read the Docs documentation.
  • Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.2.1...v1.2.2

GraphBin2 v1.2.1

23 Aug 01:58
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  • Replaced argparse with click.
  • Added sample testing data.
  • Includes minor bug fixes.
  • Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.1...v1.2.1

GraphBin2 v1.1

01 Dec 02:14
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  • Added support for Flye long-read assemblies.
  • Includes minor bug fixes.
  • Please report any issues and suggestions under GraphBin2 Issues.

Full Changelog: v1.0...v1.1

Note: We have developed GraphBin2 for Illumina short reads, and the long-read assemblies from Flye might have sparsely connected graphs. This can make the label propagation less effective and may not result in improvements.

GraphBin2 v1.0

30 Nov 03:28
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  • This is the first stable release of GraphBin2.
  • Added logging for GraphBin2.
  • Provided support scripts to format the initial binning result.
  • Added functionality to specify the delimiter.
  • Fixed naming issue with SPAdes contigs.

Full Changelog: v0.2...v1.0

Please report any issues and suggestions under GraphBin2 Issues.

GraphBin2 v0.2

10 Aug 00:16
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GraphBin2 v0.2 Pre-release
Pre-release
  • This is the second pre-release of GraphBin2.
  • Added Conda environment for GraphBin2.
  • Added progress bars for tasks.
  • Contains minor code refactoring.
  • This release may contain bugs and unhandled errors.

Full Changelog: v0.1...v0.2

Please report any issues and suggestions under GraphBin2 Issues.

GraphBin2 v0.1

19 May 13:04
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GraphBin2 v0.1 Pre-release
Pre-release
  • This is the first pre-release of GraphBin2.
  • This release may contain bugs and unhandled errors.
  • Please report any issues and suggestions under GraphBin2 Issues.