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24 Open 198 Closed
24 Open 198 Closed
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Issues list

ValueError: endog must be in the unit interval.
#280 opened Oct 22, 2024 by ktmeaton
3
manhattan plot
#273 opened Jul 19, 2024 by xqzangnolan
1
SNP and COG association with fixed effects model
#271 opened Jul 12, 2024 by OtakuZerg
4
k-mer annotation enhancement help wanted
#270 opened Jul 12, 2024 by beryl-au
@mgalardini
6
K-mer association with mixed effects model
#265 opened May 1, 2024 by komaltilwani53
6
Number of significant genes different with several runs of Pyseer bug
#264 opened Feb 29, 2024 by Samriddhi0906
@mgalardini
6
rsync webhook for docs
#258 opened Nov 21, 2023 by johnlees
Improve error messages when wrong format is used improvements
#216 opened Aug 2, 2022 by mgalardini
@mgalardini
Mapping hits using a pangenome improvements scripts
#183 opened Nov 22, 2021 by LeonardosMageiros
@mgalardini
4
Lineage-associated mutations bug
#180 opened Nov 9, 2021 by sydelstan
10
SNP vs K-mer
#174 opened Oct 19, 2021 by neginmb
1
Gene description in the significant hits summary improvements scripts
#172 opened Sep 27, 2021 by LeonardosMageiros
@mgalardini
Enet/lasso fails with "ValueError: negative dimensions are not allowed" bug improvements interface
#165 opened Jul 21, 2021 by mgalardini
@mgalardini
2
missing data is ignored with variant files but not .Rtab improvements
#157 opened Jun 3, 2021 by julibeg
@mgalardini
4
Interpretation of the results of Wald test for association between lineages and phenotype question
#156 opened May 26, 2021 by neginmb
3
ValueError when input has variants that don't occur in a single sample improvements
#153 opened May 24, 2021 by julibeg
2
Do you apply any transformation for the continuous trait in case it does not follow a normal distribution? question
#136 opened Jan 29, 2021 by neginmb
9
RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode ..... scripts warning
#118 opened Apr 8, 2020 by EricDeveaud
@mgalardini
2
Problem when running LMM tutorial docs question
#109 opened Jan 23, 2020 by flashton2003
@mgalardini
12
Logistic mixed models? improvements
#79 opened Jun 12, 2019 by cizydorczyk
@johnlees
3
Add --dbgwas option enhancement interface
#72 opened Apr 10, 2019 by johnlees
@johnlees
2
Move ranges package from bedtools enhancement
#32 opened Mar 13, 2018 by johnlees
@johnlees
4
Fitting null with perfect separation question
#30 opened Feb 16, 2018 by johnlees
@johnlees
1
Allow concise distance matrix enhancement
#6 opened Nov 2, 2017 by mgalardini
@mgalardini
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