Skip to content

Commit

Permalink
Restore rna-germline integration test (#793)
Browse files Browse the repository at this point in the history
  • Loading branch information
BMurri authored Jun 25, 2024
1 parent 3dbc72d commit 4fffe69
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/TriggerService.Tests/IntegrationTests.cs
Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,7 @@ public async Task RunAllCommonWorkflowsWaitTilDoneAsync()
("https://raw.githubusercontent.com/microsoft/gatk4-data-processing-azure/main-azure/processing-for-variant-discovery-gatk4.hg38.trigger.json", "preprocessing-hg38"),
("https://raw.githubusercontent.com/microsoft/gatk4-genome-processing-pipeline-azure/main-azure/WholeGenomeGermlineSingleSample.trigger.json", "germline"),
("https://raw.githubusercontent.com/microsoft/gatk4-somatic-snvs-indels-azure/main-azure/mutect2.trigger.json", "mutect2"),
// Docker image manifest is old ("https://raw.githubusercontent.com/microsoft/gatk4-rnaseq-germline-snps-indels-azure/jsaun/gatk4-rna-germline-variant-calling.trigger.json", "rna-germline"),
("https://raw.githubusercontent.com/microsoft/gatk4-rnaseq-germline-snps-indels-azure/main-azure/gatk4-rna-germline-variant-calling.trigger.json", "rna-germline"),
("https://raw.githubusercontent.com/microsoft/gatk4-cnn-variant-filter-azure/main-azure/cram2filtered.trigger.json", "cram-to-filtered"),
("https://raw.githubusercontent.com/microsoft/seq-format-conversion-azure/main-azure/interleaved-fastq-to-paired-fastq.trigger.json", "fastq-to-paired"),
("https://raw.githubusercontent.com/microsoft/seq-format-conversion-azure/main-azure/paired-fastq-to-unmapped-bam.trigger.json", "paired-fastq-to-unmapped-bam"),
Expand Down

0 comments on commit 4fffe69

Please sign in to comment.