This repo contains scripts used in the analysis of the Miscantus sinensis genome.
Scripts and protocols for analyzing LTRs can be found in the LTRparse directory. A- and B-preferred 13-mers can also be found in this directory.
The script call-compartents can be found in the artisanal submodule to fully install the repo, including this submodule, use the following:
git clone --recursive https://github.com/miscanthus-paper/Miscanthus-genome.git