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add pipeop IPCW draft #407

Merged
merged 86 commits into from
Oct 8, 2024
Merged

add pipeop IPCW draft #407

merged 86 commits into from
Oct 8, 2024

Commits on Aug 2, 2024

  1. add pipeop draft

    @studener
    studener committed Aug 2, 2024
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Commits on Aug 5, 2024

  1. update tests

    @studener
    studener committed Aug 5, 2024
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  2. add basic docs

    @studener
    studener committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. add pipeline draft

    @studener
    studener committed Aug 6, 2024
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  2. draft PipeOpPredClassifSurvIPCW

    @studener
    studener committed Aug 6, 2024
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  3. update pipeline

    @studener
    studener committed Aug 6, 2024
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  4. updocs

    @studener
    studener committed Aug 6, 2024
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  5. update tests

    @studener
    studener committed Aug 6, 2024
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  6. update tests

    @studener
    studener committed Aug 6, 2024
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  7. fix binding

    @studener
    studener committed Aug 6, 2024
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  8. updocs

    @studener
    studener committed Aug 6, 2024
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  9. update PipeOpPredClassifSurv

    @studener
    studener committed Aug 6, 2024
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Commits on Aug 8, 2024

  1. fix typo

    @studener
    studener committed Aug 8, 2024
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Commits on Aug 10, 2024

  1. refactor / add eps param to IPCW pipeop

    @studener
    studener committed Aug 10, 2024
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Commits on Aug 12, 2024

  1. remove time_var from features

    @studener
    studener committed Aug 12, 2024
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  2. add correct time to surv prediction

    @studener
    studener committed Aug 12, 2024
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Commits on Aug 13, 2024

  1. updocs

    @studener
    studener committed Aug 13, 2024
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  2. fix typo

    @studener
    studener committed Aug 13, 2024
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  3. update tests

    @studener
    studener committed Aug 13, 2024
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  4. correct row ids for surv prediction

    @studener
    studener committed Aug 13, 2024
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Commits on Aug 26, 2024

  1. remove classif output option / updocs

    @studener
    studener committed Aug 26, 2024
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Commits on Sep 3, 2024

  1. Merge branch 'main' into pipeop_ipcw

    @studener
    studener committed Sep 3, 2024
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  2. updocs

    @studener
    studener committed Sep 3, 2024
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Commits on Sep 4, 2024

  1. update unloading test

    @bblodfon
    bblodfon committed Sep 4, 2024
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Commits on Sep 6, 2024

  1. refactor + fixes

    @bblodfon
    bblodfon committed Sep 6, 2024
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  2. rename test file

    @bblodfon
    bblodfon committed Sep 6, 2024
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  3. add IPCW pipeop test + update pipeline test

    @bblodfon
    bblodfon committed Sep 6, 2024
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  4. update docs

    @bblodfon
    bblodfon committed Sep 6, 2024
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  5. Merge branch 'main' into pipeop_ipcw

    @bblodfon
    bblodfon committed Sep 6, 2024
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Commits on Sep 9, 2024

  1. add examples

    @studener
    studener committed Sep 9, 2024
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  2. update pipeops

    @studener
    studener committed Sep 9, 2024
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Commits on Sep 12, 2024

  1. add tests

    @studener
    studener committed Sep 12, 2024
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Commits on Sep 17, 2024

  1. Merge branch 'main' into pipeop_ipcw

    @bblodfon
    bblodfon committed Sep 17, 2024
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  2. update doc (encapsulate method from mlr3 dev)

    @bblodfon
    bblodfon committed Sep 17, 2024
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  3. improve doc and example

    @bblodfon
    bblodfon committed Sep 17, 2024
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  4. refinements (doc and eps param)

    @bblodfon
    bblodfon committed Sep 17, 2024
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  5. refine IPCW test

    @bblodfon
    bblodfon committed Sep 17, 2024
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Commits on Sep 18, 2024

  1. add comment

    @bblodfon
    bblodfon committed Sep 18, 2024
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  2. fix rare bug in graf score when evulating a survival matrix with only… 

    … 1 time point!
    @bblodfon
    bblodfon committed Sep 18, 2024
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  3. empty state => empty list, not NULL

    @bblodfon
    bblodfon committed Sep 18, 2024
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  4. update example

    @bblodfon
    bblodfon committed Sep 18, 2024
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  5. update IPCW pipeline test

    @bblodfon
    bblodfon committed Sep 18, 2024
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  6. update docs

    @bblodfon
    bblodfon committed Sep 18, 2024
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  7. update to v0.6.9

    @bblodfon
    bblodfon committed Sep 18, 2024
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Commits on Sep 20, 2024

  1. ignore docs/

    @bblodfon
    bblodfon committed Sep 20, 2024
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  2. add fancy icon

    @bblodfon
    bblodfon committed Sep 20, 2024
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  3. temp fix of math rending issue

    @bblodfon
    bblodfon committed Sep 20, 2024
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  4. update docs back to CRAN mlr3 version

    @bblodfon
    bblodfon committed Sep 20, 2024
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  5. update example

    @bblodfon
    bblodfon committed Sep 20, 2024
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  6. refactor: cutoff_time => tau

    @bblodfon
    bblodfon committed Sep 20, 2024
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  7. doc: IPCW surv predictions should be evaluated at tau only

    @bblodfon
    bblodfon committed Sep 20, 2024
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  8. fix test

    @bblodfon
    bblodfon committed Sep 20, 2024
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  9. updocs

    @bblodfon
    bblodfon committed Sep 20, 2024
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Commits on Sep 21, 2024

  1. refine doc (mlr3 style)

    @bblodfon
    bblodfon committed Sep 21, 2024
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  2. correct doc about t_max in integrated scores

    @bblodfon
    bblodfon committed Sep 21, 2024
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Commits on Sep 22, 2024

  1. add description for Rcpp function

    @bblodfon
    bblodfon committed Sep 22, 2024
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Commits on Sep 23, 2024

  1. fix spelling

    @bblodfon
    bblodfon committed Sep 23, 2024
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Commits on Sep 24, 2024

  1. fix type

    @studener
    studener committed Sep 24, 2024
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Commits on Sep 26, 2024

  1. fix typo

    @studener
    studener committed Sep 26, 2024
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Commits on Sep 27, 2024

  1. move code comment

    @bblodfon
    bblodfon committed Sep 27, 2024
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  2. fix: keep the response to the output prediction object in distrcompose

    @bblodfon
    bblodfon committed Sep 27, 2024
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  3. add checks on the times arg for the intergrated survival losses

    @bblodfon
    bblodfon committed Sep 27, 2024
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  4. refactor + add code comments in 'integrated_scores()'

    @bblodfon
    bblodfon committed Sep 27, 2024
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  5. use distr6 C++ function to constantly interpolate S(t)

    @bblodfon
    bblodfon committed Sep 27, 2024
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  6. small fix + refactoring: change the way times and t_max args are … 

    …used in 'integrated_scores()'
    @bblodfon
    bblodfon committed Sep 27, 2024
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  7. compatibility with mlr3 0.21.0

    @bblodfon
    bblodfon committed Sep 27, 2024
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  8. test IBS with times argument more thoroughly

    @bblodfon
    bblodfon committed Sep 27, 2024
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  9. update docs

    @bblodfon
    bblodfon committed Sep 27, 2024
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  10. Merge branch 'pipeop_ipcw' of https://github.com/mlr-org/mlr3proba in… 

    …to pipeop_ipcw
    @bblodfon
    bblodfon committed Sep 27, 2024
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  11. complete merging

    @bblodfon
    bblodfon committed Sep 27, 2024
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  12. change comment doc to not produce a man entry

    @bblodfon
    bblodfon committed Sep 27, 2024
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Commits on Oct 7, 2024

  1. change outside times range to a warning (more reasonable)

    @bblodfon
    bblodfon committed Oct 7, 2024
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  2. update IBS + times tests

    @bblodfon
    bblodfon committed Oct 7, 2024
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  3. update doc files for IBS

    @bblodfon
    bblodfon committed Oct 7, 2024
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  4. update doc for RNLL

    @bblodfon
    bblodfon committed Oct 7, 2024
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  5. update doc for ISBS

    @bblodfon
    bblodfon committed Oct 7, 2024
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  6. update NEWs

    @bblodfon
    bblodfon committed Oct 7, 2024
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  7. added new doc templates and refined some others

    @bblodfon
    bblodfon committed Oct 7, 2024
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Commits on Oct 8, 2024

  1. refine docs for 3 integrated survival scores (ISBS, ISS, ISSL)

    @bblodfon
    bblodfon committed Oct 8, 2024
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  2. refine examples and test for IPCW (integrated = FALSE for a single ti… 

    …mes)
    @bblodfon
    bblodfon committed Oct 8, 2024
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  3. add IPCW pipeline alias

    @bblodfon
    bblodfon committed Oct 8, 2024
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  4. add doc template for pipeline construction via ppl

    @bblodfon
    bblodfon committed Oct 8, 2024
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  5. pipeline doc refactoring

    @bblodfon
    bblodfon committed Oct 8, 2024
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  6. assert classif learner in IPCW and disctime

    @bblodfon
    bblodfon committed Oct 8, 2024
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  7. add experimental badge for 3 pipelines (survtoregr, distrcompositor, … 

    …probregr)
    @bblodfon
    bblodfon committed Oct 8, 2024
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  8. update NEWs

    @bblodfon
    bblodfon committed Oct 8, 2024
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