chore: add codespell configuration and check with lint CI job #3148
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: FloPy documentation | |
| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| workflow_dispatch: | |
| inputs: | |
| ref: | |
| description: 'The tag, branch or commit hash to trigger an RTD build for. Branches and tags must be fully formed, e.g. refs/heads/<branch> or refs/tags/<tag> respectively.' | |
| required: false | |
| type: string | |
| default: 'refs/heads/develop' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ github.event_name }} | |
| cancel-in-progress: true | |
| jobs: | |
| set_options: | |
| name: Set release options | |
| runs-on: ubuntu-22.04 | |
| outputs: | |
| ref: ${{ steps.set_ref.outputs.ref }} | |
| sha: ${{ steps.set_sha.outputs.sha }} | |
| steps: | |
| - name: Set ref | |
| id: set_ref | |
| run: | | |
| # if ref was provided explicitly via workflow_dispatch, use it | |
| if [[ ("${{ github.event_name }}" == "workflow_dispatch") && (-n "${{ inputs.ref }}") ]]; then | |
| ref="${{ inputs.ref }}" | |
| echo "using ref $ref from workflow_dispatch" | |
| else | |
| # otherwise use the current branch | |
| ref="${{ github.ref }}" | |
| echo "using current ref $ref" | |
| fi | |
| echo "ref=$ref" >> $GITHUB_OUTPUT | |
| - name: Checkout flopy repo | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ steps.set_ref.outputs.ref }} | |
| - name: Set sha | |
| id: set_sha | |
| run: | | |
| if [[ ("${{ github.event_name }}" == "workflow_dispatch") && (-n "${{ inputs.ref }}") ]]; then | |
| sha=$(git rev-parse ${{ steps.set_ref.outputs.ref }}) | |
| else | |
| sha="${{ github.sha }}" | |
| fi | |
| echo "sha=$sha" >> $GITHUB_OUTPUT | |
| rtd_build: | |
| name: Prepare and test notebooks | |
| needs: set_options | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout flopy repo | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ needs.set_options.outputs.ref }} | |
| - name: Output repo information | |
| run: | | |
| echo $GITHUB_REPOSITORY_OWNER | |
| echo $GITHUB_REPOSITORY | |
| echo $GITHUB_REF | |
| echo $GITHUB_EVENT_NAME | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: etc/environment.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| create-args: >- | |
| python=3.12 | |
| init-shell: >- | |
| bash | |
| powershell | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install . | |
| - name: Workaround OpenGL issue on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| # referenced from https://github.com/pyvista/pyvista/blob/main/.github/workflows/vtk-pre-test.yml#L53 | |
| pip uninstall -y vtk | |
| pip install --extra-index-url https://wheels.vtk.org trame vtk-osmesa | |
| - name: Install fonts on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| echo ttf-mscorefonts-installer msttcorefonts/accepted-mscorefonts-eula select true | sudo debconf-set-selections | |
| sudo apt-get install ttf-mscorefonts-installer fonts-liberation | |
| sudo rm -rf ~/.cache/matplotlib | |
| - name: Install OpenGL on Windows | |
| if: runner.os == 'Windows' | |
| shell: pwsh | |
| run: | | |
| Set-StrictMode -Version Latest | |
| $ErrorActionPreference = "Stop" | |
| $PSDefaultParameterValues['*:ErrorAction']='Stop' | |
| powershell .github/install_opengl.ps1 | |
| - name: Install Modflow-related executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Install Modflow dev build executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: modflow6-nightly-build | |
| - name: Install triangle (macOS workaround) | |
| if: runner.os == 'macOS' | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: executables | |
| ostag: mac | |
| subset: triangle | |
| - name: Run tutorial and example notebooks | |
| working-directory: autotest | |
| run: pytest -v -n auto test_notebooks.py | |
| - name: Upload notebooks artifact for ReadtheDocs | |
| if: | | |
| github.repository_owner == 'modflowpy' && | |
| runner.os == 'Linux' && | |
| ( | |
| github.event_name == 'push' || | |
| github.event_name == 'workflow_dispatch' | |
| ) | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: notebooks-for-${{ needs.set_options.outputs.sha }} | |
| path: .docs/Notebooks/*.ipynb | |
| # trigger rtd if previous job was successful | |
| rtd: | |
| name: Read the Docs trigger | |
| needs: | |
| - rtd_build | |
| - set_options | |
| runs-on: ubuntu-latest | |
| if: | |
| github.repository_owner == 'modflowpy' && | |
| ( | |
| github.event_name == 'push' || | |
| github.event_name == 'workflow_dispatch' | |
| ) | |
| steps: | |
| - name: Trigger RTDs build | |
| uses: dfm/rtds-action@v1 | |
| with: | |
| webhook_url: ${{ secrets.RTDS_WEBHOOK_URL }} | |
| webhook_token: ${{ secrets.RTDS_WEBHOOK_TOKEN }} | |
| commit_ref: ${{ needs.set_options.outputs.ref }} |