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Update README.md
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mourisl authored Jul 7, 2024
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Expand Up @@ -45,7 +45,7 @@ Centrifuger is also available from [Bioconda](https://anaconda.org/bioconda/cent
--offrate INT: SA/offset is sampled every (2^<int>) BWT chars [4]
--subset-tax INT: only consider the subset of input genomes under taxonomy node <int> [0]

An example of pre-built index containing human, bacteria, archea, and virus genomes from RefSeq plus SARS-CoV-2 variants from GenBank is available at [Zenodo](https://zenodo.org/records/10023239). The default --bmax and --dcv option may be inefficient for building indexes for larger genome databases, please use --build-mem option to specify the rough estimation of the available memory.
An example of pre-built index containing human, bacteria, archea, and virus genomes from RefSeq plus SARS-CoV-2 variants from GenBank is available at [Zenodo](https://zenodo.org/records/10023239). Another pre-built index for [GTDB](https://gtdb.ecogenomic.org/) r220 is available at [Dropbox](https://www.dropbox.com/scl/fo/wtsermtdd62n1ttryuhwv/ADWTYiJA6Dh5gdbHmwC2nfo?rlkey=fgdpthjukcj1uhsjrcv35j927&dl=0). The default --bmax and --dcv option may be inefficient for building indexes for larger genome databases, please use --build-mem option to specify the rough estimation of the available memory.

#### Classification

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