Skip to content

Issues: nanoporetech/modkit

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

94 Open 199 Closed
94 Open 199 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

modkit extract full and modkit extract calls
#296 opened Nov 6, 2024 by Flower9618
Using segmenting on differential methylation
#295 opened Nov 5, 2024 by Raya-Faigenbaum-Romm
bedMethyl index missing in dmr multi with replicates
#294 opened Nov 5, 2024 by Yang990-sys
2
Documentation ambiguity documentation Improvements or additions to documentation
#293 opened Oct 31, 2024 by Ge0rges
1
how is calculate valid_coverage ? Different results between total read or subsample reads question Looking for clarification on inputs and/or outputs
#292 opened Oct 29, 2024 by DelphIONe
1
Install failed: fatal error: '-fuse-linker-plugin', but liblto_plugin.so not found troubleshooting workflow and data preparation questions
#291 opened Oct 28, 2024 by liuyang2006
1
How does Modkit handle long-read methylation 3D genomic data question Looking for clarification on inputs and/or outputs
#289 opened Oct 24, 2024 by biozzq
1
result from "modkit pileup" command question Looking for clarification on inputs and/or outputs
#288 opened Oct 22, 2024 by Flower9618
5
Modkit calling methylation on incompatible nucleotide question Looking for clarification on inputs and/or outputs
#286 opened Oct 20, 2024 by Ge0rges
15
Indexing error in dmr multi bug Something isn't working DMR modkit dmr troubleshooting workflow and data preparation questions
#285 opened Oct 18, 2024 by Ge0rges
4
Inferring Hypermethylated and Hypomethylated Bases from ModKit DMR Pair Results question Looking for clarification on inputs and/or outputs
#283 opened Oct 18, 2024 by Bhavesh-Tiwarekar
1
benchmark comparison of DMR detection tool DMR modkit dmr documentation Improvements or additions to documentation
#281 opened Oct 17, 2024 by charliechen912ilovbash
2
modkit dmr pair of pileup bed file subset to 4mC question Looking for clarification on inputs and/or outputs
#279 opened Oct 15, 2024 by SimonChen1997
6
Validity of correlation between different RNA modification calls enhancement New feature or request question Looking for clarification on inputs and/or outputs
#278 opened Oct 14, 2024 by mbosm
1
m6A methylation analysis and explanation of output files question Looking for clarification on inputs and/or outputs
#276 opened Oct 8, 2024 by JhinJhinJhin
6
Redundant motifs from modkit motif search enhancement New feature or request
#272 opened Sep 30, 2024 by galenptacek
4
Request: additional output columns for extract enhancement New feature or request
#270 opened Sep 28, 2024 by OberonDixon
1
Difference in total counts of each probability per modification in different pore chemistries question Looking for clarification on inputs and/or outputs
#269 opened Sep 26, 2024 by eesiribloom
8
adjust-mods for skipped reads question Looking for clarification on inputs and/or outputs
#268 opened Sep 25, 2024 by ekushele
1
Strange bias between percent_modified and valid_coverage from modkit pileup question Looking for clarification on inputs and/or outputs
#262 opened Sep 13, 2024 by flofloflo-cell
9
Normalized the DMR scores question Looking for clarification on inputs and/or outputs
#261 opened Sep 13, 2024 by Congnguyenn
4
Merge bedmethyl file enhancement New feature or request
#260 opened Sep 12, 2024 by meydaria
1
how to interpret 5mC and 5hmC call for same position in the genome question Looking for clarification on inputs and/or outputs
#258 opened Sep 9, 2024 by dasn588
1
Using a negative control sample to inform thresholds? question Looking for clarification on inputs and/or outputs
#257 opened Sep 6, 2024 by hackkr
1
modkit pileup - modified based code = 17802 question Looking for clarification on inputs and/or outputs
#256 opened Sep 4, 2024 by reJELIN
1
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.