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Merge pull request #26 from ncbi/develop
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Update README.md
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r78v10a07 authored Nov 15, 2018
2 parents bee163c + c4a5b06 commit 4ff073f
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -18,12 +18,13 @@ Compile it on this way and set the environment variables for TPMCalculator:
cd bamtools
mkdir build
cd build
cmake ..
cmake -DCMAKE_INSTALL_PREFIX=../ ..
make
make install
cd ..
export BAMTOOLS_DIR=`pwd`
export CPPFLAGS="-I $BAMTOOLS_DIR/include"
export LDFLAGS="-L $BAMTOOLS_DIR/lib -Wl,-rpath,$BAMTOOLS_DIR/lib"
export CPPFLAGS="-I $BAMTOOLS_DIR/include/bamtools/"
export LDFLAGS="-L $BAMTOOLS_DIR/lib64 -Wl,-rpath,$BAMTOOLS_DIR/lib64"

That's it. BAMTools was compiled and the env variables were set for compiling
TPMCalculator.
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