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Bump crypt4gh to fix another issue iwth coordinates #362

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Jan 22, 2024
Merged

Bump crypt4gh to fix another issue iwth coordinates #362

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af1c113
Bump dependency crypt4gh to 1.8.9
pontus Jan 19, 2024
22ff283
Signal on failed test
pontus Jan 19, 2024
4c4b5ed
Add test for previous buggy case
pontus Jan 19, 2024
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14 changes: 14 additions & 0 deletions .github/integration/tests/common/50_check_endpoint.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -88,6 +88,7 @@ if [[ $status = 0 ]]; then
echo "Files are the same"
else
echo "Files are different"
exit 1
fi

curl --cacert certs/ca.pem -H "Authorization: Bearer $token" "https://localhost:8443/files/urn:neic:001-002?startCoordinate=0&endCoordinate=2" --output test-part.txt
Expand Down Expand Up @@ -116,6 +117,19 @@ else
exit 1
fi

curl --cacert certs/ca.pem -H "Authorization: Bearer $token" "https://localhost:8443/files/urn:neic:001-002?startCoordinate=70000&endCoordinate=140000" --output test-part3.txt

dd if=old-file.txt ibs=1 skip=70000 count=70000 > old-part3.txt

cmp --silent old-part3.txt test-part3.txt
status=$?
if [[ $status = 0 ]]; then
echo "Files are the same"
else
echo "Files are different"
exit 1
fi

# ------------------
# Test get visas failed

Expand Down
6 changes: 5 additions & 1 deletion go.mod
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ require (
github.com/johannesboyne/gofakes3 v0.0.0-20230914150226-f005f5cc03aa
github.com/lestrrat-go/jwx/v2 v2.0.19
github.com/lib/pq v1.10.9
github.com/neicnordic/crypt4gh v1.8.8
github.com/neicnordic/crypt4gh v1.8.9
github.com/sirupsen/logrus v1.9.3
github.com/spf13/viper v1.18.2
github.com/stretchr/testify v1.8.4
Expand All @@ -36,7 +36,9 @@ require (
github.com/go-playground/validator/v10 v10.15.2 // indirect
github.com/goccy/go-json v0.10.2 // indirect
github.com/golang/glog v1.1.2 // indirect
github.com/hashicorp/go-version v1.6.0 // indirect
github.com/hashicorp/hcl v1.0.0 // indirect
github.com/jessevdk/go-flags v1.5.0 // indirect
github.com/jmespath/go-jmespath v0.4.0 // indirect
github.com/json-iterator/go v1.1.12 // indirect
github.com/klauspost/cpuid/v2 v2.2.5 // indirect
Expand All @@ -46,6 +48,7 @@ require (
github.com/lestrrat-go/httprc v1.0.4 // indirect
github.com/lestrrat-go/iter v1.0.2 // indirect
github.com/lestrrat-go/option v1.0.1 // indirect
github.com/logrusorgru/aurora/v4 v4.0.0 // indirect
github.com/magiconair/properties v1.8.7 // indirect
github.com/mattn/go-isatty v0.0.19 // indirect
github.com/mitchellh/mapstructure v1.5.0 // indirect
Expand All @@ -72,6 +75,7 @@ require (
golang.org/x/crypto v0.18.0 // indirect
golang.org/x/net v0.20.0 // indirect
golang.org/x/sys v0.16.0 // indirect
golang.org/x/term v0.16.0 // indirect
golang.org/x/text v0.14.0 // indirect
golang.org/x/tools v0.17.0 // indirect
google.golang.org/protobuf v1.31.0 // indirect
Expand Down
10 changes: 10 additions & 0 deletions go.sum
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Original file line number Diff line number Diff line change
Expand Up @@ -60,8 +60,12 @@ github.com/google/go-cmp v0.5.9 h1:O2Tfq5qg4qc4AmwVlvv0oLiVAGB7enBSJ2x2DqQFi38=
github.com/google/gofuzz v1.0.0/go.mod h1:dBl0BpW6vV/+mYPU4Po3pmUjxk6FQPldtuIdl/M65Eg=
github.com/google/uuid v1.5.0 h1:1p67kYwdtXjb0gL0BPiP1Av9wiZPo5A8z2cWkTZ+eyU=
github.com/google/uuid v1.5.0/go.mod h1:TIyPZe4MgqvfeYDBFedMoGGpEw/LqOeaOT+nhxU+yHo=
github.com/hashicorp/go-version v1.6.0 h1:feTTfFNnjP967rlCxM/I9g701jU+RN74YKx2mOkIeek=
github.com/hashicorp/go-version v1.6.0/go.mod h1:fltr4n8CU8Ke44wwGCBoEymUuxUHl09ZGVZPK5anwXA=
github.com/hashicorp/hcl v1.0.0 h1:0Anlzjpi4vEasTeNFn2mLJgTSwt0+6sfsiTG8qcWGx4=
github.com/hashicorp/hcl v1.0.0/go.mod h1:E5yfLk+7swimpb2L/Alb/PJmXilQ/rhwaUYs4T20WEQ=
github.com/jessevdk/go-flags v1.5.0 h1:1jKYvbxEjfUl0fmqTCOfonvskHHXMjBySTLW4y9LFvc=
github.com/jessevdk/go-flags v1.5.0/go.mod h1:Fw0T6WPc1dYxT4mKEZRfG5kJhaTDP9pj1c2EWnYs/m4=
github.com/jmespath/go-jmespath v0.4.0 h1:BEgLn5cpjn8UN1mAw4NjwDrS35OdebyEtFe+9YPoQUg=
github.com/jmespath/go-jmespath v0.4.0/go.mod h1:T8mJZnbsbmF+m6zOOFylbeCJqk5+pHWvzYPziyZiYoo=
github.com/jmespath/go-jmespath/internal/testify v1.5.1 h1:shLQSRRSCCPj3f2gpwzGwWFoC7ycTf1rcQZHOlsJ6N8=
Expand Down Expand Up @@ -93,6 +97,8 @@ github.com/lestrrat-go/option v1.0.1 h1:oAzP2fvZGQKWkvHa1/SAcFolBEca1oN+mQ7eooNB
github.com/lestrrat-go/option v1.0.1/go.mod h1:5ZHFbivi4xwXxhxY9XHDe2FHo6/Z7WWmtT7T5nBBp3I=
github.com/lib/pq v1.10.9 h1:YXG7RB+JIjhP29X+OtkiDnYaXQwpS4JEWq7dtCCRUEw=
github.com/lib/pq v1.10.9/go.mod h1:AlVN5x4E4T544tWzH6hKfbfQvm3HdbOxrmggDNAPY9o=
github.com/logrusorgru/aurora/v4 v4.0.0 h1:sRjfPpun/63iADiSvGGjgA1cAYegEWMPCJdUpJYn9JA=
github.com/logrusorgru/aurora/v4 v4.0.0/go.mod h1:lP0iIa2nrnT/qoFXcOZSrZQpJ1o6n2CUf/hyHi2Q4ZQ=
github.com/magiconair/properties v1.8.7 h1:IeQXZAiQcpL9mgcAe1Nu6cX9LLw6ExEHKjN0VQdvPDY=
github.com/magiconair/properties v1.8.7/go.mod h1:Dhd985XPs7jluiymwWYZ0G4Z61jb3vdS329zhj2hYo0=
github.com/mattn/go-isatty v0.0.19 h1:JITubQf0MOLdlGRuRq+jtsDlekdYPia9ZFsB8h/APPA=
Expand All @@ -106,6 +112,8 @@ github.com/modern-go/reflect2 v1.0.2 h1:xBagoLtFs94CBntxluKeaWgTMpvLxC4ur3nMaC9G
github.com/modern-go/reflect2 v1.0.2/go.mod h1:yWuevngMOJpCy52FWWMvUC8ws7m/LJsjYzDa0/r8luk=
github.com/neicnordic/crypt4gh v1.8.8 h1:mP0VSAspADLIJPC+a0o4lfzX49O4clkMkYoXKRHh6MM=
github.com/neicnordic/crypt4gh v1.8.8/go.mod h1:Wq3Y/xgaEA2rDoYiqT91uIXIlZO2IJOWnwtcQg4RiqU=
github.com/neicnordic/crypt4gh v1.8.9 h1:NiP4DBzmlcNxhT34gIOm+0cVb0utenP58Q7bvUeDuhw=
github.com/neicnordic/crypt4gh v1.8.9/go.mod h1:9jve3/N4BQTdiO6cnWqwg/4xQic6dQzPSPZqfAu9GBo=
github.com/pelletier/go-toml/v2 v2.1.0 h1:FnwAJ4oYMvbT/34k9zzHuZNrhlz48GB3/s6at6/MHO4=
github.com/pelletier/go-toml/v2 v2.1.0/go.mod h1:tJU2Z3ZkXwnxa4DPO899bsyIoywizdUvyaeZurnPPDc=
github.com/pkg/errors v0.9.1 h1:FEBLx1zS214owpjy7qsBeixbURkuhQAwrK5UwLGTwt4=
Expand Down Expand Up @@ -189,6 +197,7 @@ golang.org/x/sync v0.1.0/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
golang.org/x/sys v0.0.0-20190215142949-d0b11bdaac8a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
golang.org/x/sys v0.0.0-20200202164722-d101bd2416d5/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
golang.org/x/sys v0.0.0-20201119102817-f84b799fce68/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
golang.org/x/sys v0.0.0-20210320140829-1e4c9ba3b0c4/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
golang.org/x/sys v0.0.0-20210615035016-665e8c7367d1/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.0.0-20220520151302-bc2c85ada10a/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.0.0-20220715151400-c0bba94af5f8/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
Expand All @@ -206,6 +215,7 @@ golang.org/x/term v0.1.0/go.mod h1:jbD1KX2456YbFQfuXm/mYQcufACuNUgVhRMnK/tPxf8=
golang.org/x/term v0.5.0/go.mod h1:jMB1sMXY+tzblOD4FWmEbocvup2/aLOaQEp7JmGp78k=
golang.org/x/term v0.7.0/go.mod h1:P32HKFT3hSsZrRxla30E9HqToFYAQPCMs/zFMBUFqPY=
golang.org/x/term v0.16.0 h1:m+B6fahuftsE9qjo0VWp2FW0mB3MTJvR0BaMQrq0pmE=
golang.org/x/term v0.16.0/go.mod h1:yn7UURbUtPyrVJPGPq404EukNFxcm/foM+bV/bfcDsY=
golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
golang.org/x/text v0.3.3/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
golang.org/x/text v0.3.7/go.mod h1:u+2+/6zg+i71rQMx5EYifcz6MCKuco9NR6JIITiCfzQ=
Expand Down
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