Ewm6378 fix full masking in reduction #3506
Workflow file for this run
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| name: CI | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: [main, qa, next] | |
| tags: ['v*'] | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up MicroMamaba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: '1.5.10-0' | |
| environment-file: environment.yml | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - default | |
| - mantid/label/nightly | |
| cache-environment-key: ${{ runner.os }}-env-${{ hashFiles('**/environment.yml') }} | |
| cache-downloads-key: ${{ runner.os }}-downloads-${{ hashFiles('**/environment.yml') }} | |
| - name: Apt install deps | |
| run: | | |
| sudo apt update | |
| sudo apt-get install xvfb | |
| - name: Start xvfb daemon | |
| run: | | |
| /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -ac -screen 0 1280x1024x16 | |
| - name: Test with pytest | |
| run: | | |
| xvfb-run --server-args="-screen 0 1280x1024x16" -a python -m pytest --cov=src --cov-report=xml --cov-report=term -m "not integration" | |
| - name: Upload coverage reports | |
| uses: codecov/codecov-action@v4 | |
| if: | |
| github.actor != 'dependabot[bot]' | |
| with: | |
| fail_ci_if_error: true | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| # - name: mypy checks | |
| # shell: bash -l {0} | |
| # run: | | |
| # python -m mypy --config-file=$(pwd)/pyproject.toml $(pwd) | |
| - name: Gui tests | |
| run: | | |
| python -m pip install -e . # install the application in editable mode | |
| env=tests/resources/headcheck.yml xvfb-run --server-args="-screen 0 1280x1024x16" --auto-servernum snapred --headcheck | |
| integration-tests: | |
| runs-on: snapred-builder | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Cleanup MicroMamba | |
| run: | | |
| sudo rm -rf /home/cloud/micromamba-bin/micromamba | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| lfs: true | |
| - name: Set up MicroMamaba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: '1.5.10-0' | |
| environment-file: environment.yml | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - default | |
| - mantid/label/nightly | |
| cache-environment-key: ${{ runner.os }}-env-${{ hashFiles('**/environment.yml') }} | |
| cache-downloads-key: ${{ runner.os }}-downloads-${{ hashFiles('**/environment.yml') }} | |
| post-cleanup: all | |
| - name: DNF install deps | |
| run: | | |
| sudo dnf makecache --refresh | |
| sudo yum -y install xorg-x11-server-Xvfb | |
| - name: Test with pytest | |
| run: | | |
| env=tests/resources/integration_test xvfb-run --server-args="-screen 0 1280x1024x16" -a python -m pytest -m "datarepo and integration" --cov=src --cov-report=xml --cov-report=term | |
| - name: Upload coverage reports | |
| uses: codecov/codecov-action@v4 | |
| if: | |
| github.actor != 'dependabot[bot]' | |
| with: | |
| fail_ci_if_error: true | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| conda-build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.8"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up MicroMamaba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: '1.5.10-0' | |
| environment-file: environment.yml | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - default | |
| - mantid/label/nightly | |
| cache-environment-key: ${{ runner.os }}-env-${{ hashFiles('**/environment.yml') }} | |
| cache-downloads-key: ${{ runner.os }}-downloads-${{ hashFiles('**/environment.yml') }} | |
| - name: Build conda libraray | |
| shell: bash -l {0} | |
| run: | | |
| # set up environment | |
| cd conda.recipe | |
| echo "versioningit $(versioningit ../)" | |
| # build the package | |
| VERSION=$(versioningit ../) conda mambabuild --channel conda-forge --output-folder . . | |
| conda verify noarch/snapred*.tar.bz2 | |
| - name: Deploy to Anaconda | |
| shell: bash -l {0} | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| env: | |
| ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | |
| IS_RC: ${{ contains(github.ref, 'rc') }} | |
| run: | | |
| # label is main or rc depending on the tag-name | |
| CONDA_LABEL="main" | |
| if [ "${IS_RC}" = "true" ]; then CONDA_LABEL="rc"; fi | |
| echo pushing ${{ github.ref }} with label $CONDA_LABEL | |
| anaconda upload --label $CONDA_LABEL conda.recipe/noarch/snapred*.tar.bz2 | |
| trigger-deploy: | |
| runs-on: ubuntu-latest | |
| needs: [tests, conda-build] | |
| # only trigger deploys from protected branches and tags | |
| if: ${{github.ref_protected || github.ref_type == 'tag' }} | |
| steps: | |
| - name: Determine Environment | |
| uses: neutrons/branch-mapper@v2 | |
| id: conda_env_name | |
| with: | |
| prefix: snapred | |
| - name: Trigger deploy | |
| id: trigger | |
| uses: eic/trigger-gitlab-ci@v3 | |
| with: | |
| url: https://code.ornl.gov | |
| token: ${{ secrets.GITLAB_TRIGGER_TOKEN }} | |
| ref_name: main | |
| project_id: 7835 | |
| variables: | | |
| PLAY="update" | |
| CONDA_ENV="${{ steps.conda_env_name.outputs.name }}" |