Add integration tests #38
Workflow file for this run
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| name: CI | |
| on: | |
| pull_request: | |
| push: | |
| branches: main | |
| tags: ['v*'] | |
| workflow_dispatch: | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v2 | |
| - name: Set up MicroMamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - default | |
| cache-environment: true | |
| - name: Unit test with code coverage | |
| shell: bash -l {0} | |
| run: python -m pytest -vv --cov=postprocessing --cov=scripts --cov-report=xml --cov-report=term | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| integration-tests: | |
| runs-on: ubuntu-latest | |
| needs: tests | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v2 | |
| - name: Set up MicroMamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - default | |
| cache-environment: true | |
| - name: start docker containers | |
| run: docker-compose -f tests/integration/docker-compose.yml up --build -d | |
| - name: sleep to wait for containers to start up | |
| run: sleep 2 | |
| - name: Run integration tests | |
| shell: bash -l {0} | |
| run: python -m pytest tests/integration | |
| - name: stop docker containers | |
| run: docker-compose -f tests/integration/docker-compose.yml down | |
| rpm: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v2 | |
| - name: Build RPM inside Docker | |
| run: | | |
| docker build --tag postprocess --target=package -f Dockerfile . | |
| fname=`docker run -v $(pwd):/store postprocess ls /root/rpmbuild/RPMS/noarch` | |
| docker run -v `pwd`:/store postprocess mv /root/rpmbuild/RPMS/noarch/$fname /store | |
| one=${fname#*postprocessing-} | |
| two=${one%.noarch*} | |
| echo "::set-output name=version::$two" | |
| echo "::set-output name=fname::$fname" | |
| continue-on-error: false | |
| # TODO: uncomment this once we have switched to python3 and can conda install the module build | |
| # wheel: | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Checkout Repository | |
| # uses: actions/checkout@v2 | |
| # | |
| # - name: Set up MicroMamba | |
| # uses: mamba-org/setup-micromamba@v1 | |
| # with: | |
| # environment-file: environment.yml | |
| # condarc: | | |
| # channels: | |
| # - conda-forge | |
| # - default | |
| # cache-environment: true | |
| # | |
| # - name: Build wheel | |
| # shell: bash -l {0} | |
| # run: python -m build --wheel |