funannotate v1.1.0

• bumping version to 1.1.0 to highlight that v1.0.X versions have a bug in the tbl annotation file and will not pass GenBank specs. This was derived from dropping GAG from funannotate I had the tbl spec wrong for adding transcript_id and protein_id to both CDS and mRNA features.
• fixes for funannotate update and properly filtering overlapping genes
• fix for funannotate annotate that was switching the 5' and 3' partial gene designations on crick orientated gene models, causing them to look correct after predict step and then become errors after annotate step
• added Braker 2.0.3 to funannotate.... this was necessary as braker.pl --version doesn't display the version number so I can't enforce a version requirement. The larger issue has to do with how the different versions of braker save the output data, there are at least 3 different behaviors in the last 4 or 5 versions which makes impossible for funannotate to determine where output will be.