funannotate v1.2.0

• v1.2.0 now supports multiple transcripts per gene locus. The funannotate pipeline will only generate multiple transcripts per locus if given evidence in the form of RNA-seq data, this is done in the funannotate update command. It should also now support input with multiple transcripts as well.
• move installation of busco models to funannotate setup
• added annotation edit distance (AED) to funannotate update to record the changes in annotation. As well the PASA annotation update text file is changed to incorporate these changes as well
• accessory script util/compare2annotations.py can compare multiple annotations in either GFF3 or GBK format to a reference, generating summary stats as well as individual gene stats (AED per mRNA and CDS)
• added a --drop option to funannotate fix that you can remove unwanted gene model annotations, to use pass a file containing locus_tag (1 per line) to the --drop parameter
• fix bug in finding high-quality Augustus predictions (HiQ) models in funannotate predict
• funannotate predict will now detect if a training folder exists in output directory, if it does it will find the correct PASA, BAM, and Trinity output and use automatically during the prediction step.