Merge pull request #217 from luslab/dev #577

Run time

Learn about OS pricing on GitHub Actions

Job	Run time
Run standard pipeline test (23.04.0)	4m 52s
Run standard pipeline test	5m 11s
Run standard pipeline test (edge version)	4m 41s
Run extended pipeline test (23.04.0)	10m 26s
Run extended pipeline test	10m 51s
23.04.0 test_genome_options	3m 17s
23.04.0 test_genome_options_spikein	4m 58s
23.04.0 test_samplesheet	10m 5s
23.04.0 test_samplesheet_2	3m 13s
23.04.0 test_samplesheet_3	46s
23.04.0 test_filtering_noqfilter	2m 58s
23.04.0 test_filtering_withqfilter	3m 8s
23.04.0 test_bam_scale_none	2m 12s
23.04.0 test_bam_scale_spikein	2m 18s
23.04.0 test_bam_scale_cpm	2m 35s
23.04.0 test_bam_scale_rpkm	2m 32s
23.04.0 test_bam_scale_bpm	2m 31s
23.04.0 test_bam_scale_cpm_iggscale	2m 29s
23.04.0 test_peak_callers_seacr	4m 0s
23.04.0 test_peak_callers_macs2	6m 15s
23.04.0 test_peak_callers_invalid	34s
23.04.0 test_peak_callers_seacr_macs2	2m 20s
23.04.0 test_peak_callers_macs2_seacr	2m 21s
23.04.0 test_peak_callers_seacr_macs2_noigg	2m 6s
23.04.0 test_peak_callers_ctrl_tests	5m 9s
23.04.0 test_consensus_peaks_group	4m 21s
23.04.0 test_consensus_peaks_all	4m 8s
23.04.0 test_consensus_peaks_invalid	26s
23.04.0 verify_output_only_input	1m 3s
23.04.0 verify_output_save_merged	1m 39s
23.04.0 verify_output_save_trimmed	1m 38s
23.04.0 verify_output_skip_trimming	1m 30s
23.04.0 verify_output_skip_fastqc	2m 2s
23.04.0 verify_output_save_ref	1m 7s
23.04.0 verify_output_align_only_align	2m 49s
23.04.0 verify_output_align_only_align_end_to_end	1m 57s
23.04.0 verify_output_align_only_align_local	1m 47s
23.04.0 verify_output_align_intermed	3m 1s
23.04.0 verify_output_align_save_spikein_align	1m 57s
23.04.0 verify_output_align_save_unaligned	2m 11s
23.04.0 verify_output_align_duplicates_mark	2m 30s
23.04.0 verify_output_align_duplicates_remove	3m 19s
23.04.0 verify_output_align_duplicates_remove_target	2m 58s
23.04.0 verify_output_align_linear_duplicates_remove	3m 2s
23.04.0 verify_output_align_linear_duplicates_remove_target	2m 57s
23.04.0 verify_output_only_filtering	4m 45s
23.04.0 verify_output_only_filtering_with_mitochondrial_reads	2m 35s
23.04.0 verify_output_only_filtering_without_mitochondrial_reads	2m 15s
23.04.0 verify_output_only_filtering_without_mitochondrial_reads_mito_name_null	2m 24s
23.04.0 verify_output_peak_calling_only_peak_calling	4m 33s
23.04.0 verify_output_reporting_skip_preseq_false	3m 46s
23.04.0 verify_output_reporting_skip_preseq_true	3m 24s
23.04.0 verify_output_reporting_skip_dtqc_false	10m 9s
23.04.0 verify_output_reporting_skip_dtqc_true	9m 9s
23.04.0 verify_output_reporting_skip_heatmaps_false	4m 18s
23.04.0 verify_output_reporting_skip_heatmaps_true	3m 28s
23.04.0 verify_output_reporting_skip_heatmaps_grouped	3m 32s
23.04.0 verify_output_reporting_skip_igv_false	4m 20s
23.04.0 verify_output_reporting_skip_igv_true	4m 8s
23.04.0 verify_output_reporting_skip_multiqc_false	4m 19s
23.04.0 verify_output_reporting_skip_multiqc_true	4m 31s
23.04.0 verify_output_reporting_skip_peak_qc_false	4m 17s
23.04.0 verify_output_reporting_skip_peak_qc_true	4m 24s
23.04.0 verify_output_reporting_skip_reporting	2m 44s
test_genome_options	3m 5s
test_genome_options_spikein	4m 56s
test_samplesheet	9m 9s
test_samplesheet_2	2m 31s
test_samplesheet_3	2m 7s
test_filtering_noqfilter	3m 16s
test_filtering_withqfilter	3m 28s
test_bam_scale_none	2m 27s
test_bam_scale_spikein	2m 24s
test_bam_scale_cpm	2m 47s
test_bam_scale_rpkm	2m 46s
test_bam_scale_bpm	2m 29s
test_bam_scale_cpm_iggscale	2m 53s
test_peak_callers_seacr	4m 0s
test_peak_callers_macs2	6m 42s
test_peak_callers_invalid	43s
test_peak_callers_seacr_macs2	2m 21s
test_peak_callers_macs2_seacr	2m 19s
test_peak_callers_seacr_macs2_noigg	2m 8s
test_peak_callers_ctrl_tests	5m 0s
test_consensus_peaks_group	4m 28s
test_consensus_peaks_all	4m 15s
test_consensus_peaks_invalid	47s
verify_output_only_input	43s
verify_output_save_merged	1m 47s
verify_output_save_trimmed	1m 34s
verify_output_skip_trimming	1m 16s
verify_output_skip_fastqc	1m 26s
verify_output_save_ref	1m 1s
verify_output_align_only_align	2m 59s
verify_output_align_only_align_end_to_end	1m 58s
verify_output_align_only_align_local	2m 27s
verify_output_align_intermed	3m 6s
verify_output_align_save_spikein_align	2m 3s
verify_output_align_save_unaligned	1m 50s
verify_output_align_duplicates_mark	2m 36s
verify_output_align_duplicates_remove	3m 2s
verify_output_align_duplicates_remove_target	2m 46s
verify_output_align_linear_duplicates_remove	2m 58s
verify_output_align_linear_duplicates_remove_target	3m 32s
verify_output_only_filtering	4m 49s
verify_output_only_filtering_with_mitochondrial_reads	2m 38s
verify_output_only_filtering_without_mitochondrial_reads	2m 42s
verify_output_only_filtering_without_mitochondrial_reads_mito_name_null	2m 45s
verify_output_peak_calling_only_peak_calling	4m 56s
verify_output_reporting_skip_preseq_false	3m 22s
verify_output_reporting_skip_preseq_true	3m 36s
verify_output_reporting_skip_dtqc_false	10m 20s
verify_output_reporting_skip_dtqc_true	9m 48s
verify_output_reporting_skip_heatmaps_false	4m 4s
verify_output_reporting_skip_heatmaps_true	3m 16s
verify_output_reporting_skip_heatmaps_grouped	3m 26s
verify_output_reporting_skip_igv_false	4m 5s
verify_output_reporting_skip_igv_true	4m 5s
verify_output_reporting_skip_multiqc_false	4m 44s
verify_output_reporting_skip_multiqc_true	4m 23s
verify_output_reporting_skip_peak_qc_false	4m 28s
verify_output_reporting_skip_peak_qc_true	4m 29s
verify_output_reporting_skip_reporting	2m 56s
	7h 10m 8s

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Merge pull request #217 from luslab/dev #577

Usage

Merge pull request #217 from luslab/dev #577

Jobs

Run details

Run time