Merge pull request #698 from nf-core/fix-prodigal-pigz

Fix prodigal pigz command
nf-core · Oct 21, 2024 · 7d66153 · 7d66153
2 parents 17d87ff + 91fad57
commit 7d66153
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -19,6 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [#674](https://github.com/nf-core/mag/pull/674) - Add porechop and filtlong logs to multiqc (added by @muabnezor)
 - [#674](https://github.com/nf-core/mag/pull/674) - Change local filtlong module to the official nf-core/filtlong module (added by @muabnezor)
 - [#690](https://github.com/nf-core/mag/pull/690) - MaxBin2 now using the abundance information from different samples rather than an average (reported by @uel3 and fixed by @d4straub)
+- [#698](https://github.com/nf-core/mag/pull/698) - Updated prodigal module to not pick up input symlinks for compression causing pigz errors (reported by @zackhenny, fix by @jfy133 )
 
 ### `Dependencies`
 

diff --git a/modules.json b/modules.json
@@ -219,7 +219,7 @@
                     },
                     "prodigal": {
                         "branch": "master",
-                        "git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "prokka": {

diff --git a/modules/nf-core/prodigal/environment.yml b/modules/nf-core/prodigal/environment.yml
diff --git a/modules/nf-core/prodigal/main.nf b/modules/nf-core/prodigal/main.nf
diff --git a/modules/nf-core/prodigal/meta.yml b/modules/nf-core/prodigal/meta.yml
diff --git a/modules/nf-core/prodigal/tests/main.nf.test b/modules/nf-core/prodigal/tests/main.nf.test