Fix option in script

nf-core · Oct 27, 2024 · c63e084 · c63e084
1 parent 3e49dbf
commit c63e084
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/combine_tables.py b/bin/combine_tables.py
@@ -20,7 +20,7 @@ def parse_args(args=None):
     )
     parser.add_argument("-b", "--busco_summary", metavar="FILE", help="BUSCO summary file.")
     parser.add_argument("-c", "--checkm_summary", metavar="FILE", help="CheckM summary file.")
-    parser.add_argument("-c", "--checkm2_summary", metavar="FILE", help="CheckM2 summary file.")
+    parser.add_argument("-C", "--checkm2_summary", metavar="FILE", help="CheckM2 summary file.")
     parser.add_argument("-q", "--quast_summary", metavar="FILE", help="QUAST BINS summary file.")
     parser.add_argument("-g", "--gtdbtk_summary", metavar="FILE", help="GTDB-Tk summary file.")
     parser.add_argument("-a", "--cat_summary", metavar="FILE", help="CAT table file.")