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Fix prodigal pigz command #698

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Oct 21, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#674](https://github.com/nf-core/mag/pull/674) - Add porechop and filtlong logs to multiqc (added by @muabnezor)
- [#674](https://github.com/nf-core/mag/pull/674) - Change local filtlong module to the official nf-core/filtlong module (added by @muabnezor)
- [#690](https://github.com/nf-core/mag/pull/690) - MaxBin2 now using the abundance information from different samples rather than an average (reported by @uel3 and fixed by @d4straub)
- [#698](https://github.com/nf-core/mag/pull/698) - Updated prodigal module to not pick up input symlinks for compression causing pigz errors (reported by @zackhenny, fix by @jfy133 )

### `Dependencies`

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2 changes: 1 addition & 1 deletion modules.json
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Expand Up @@ -219,7 +219,7 @@
},
"prodigal": {
"branch": "master",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"prokka": {
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6 changes: 6 additions & 0 deletions modules/nf-core/prodigal/environment.yml

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24 changes: 22 additions & 2 deletions modules/nf-core/prodigal/main.nf

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98 changes: 60 additions & 38 deletions modules/nf-core/prodigal/meta.yml

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101 changes: 101 additions & 0 deletions modules/nf-core/prodigal/tests/main.nf.test

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