chore: Update snapshots

nf-core · Aug 25, 2023 · 675f73c · 675f73c
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commit 675f73c
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Showing 3 changed files with 23 additions and 23 deletions.
diff --git a/tests/pipeline/bismark/main.nf.test.snap b/tests/pipeline/bismark/main.nf.test.snap
@@ -1,21 +1,21 @@
 {
     "clipping_params_software_versions": {
         "content": [
-            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, SAMPLESHEET_CHECK={python=3.8.3}, TRIMGALORE={cutadapt=3.4, trimgalore=0.6.7}, Workflow={nf-core/methylseq=2.5.0dev}}"
+            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, TRIMGALORE={cutadapt=3.4, trimgalore=0.6.7}, Workflow={nf-core/methylseq=2.5.0dev}}"
         ],
-        "timestamp": "2023-06-01T02:27:54+0000"
+        "timestamp": "2023-08-25T19:47:04+0000"
     },
     "single_end_software_versions": {
         "content": [
-            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, SAMPLESHEET_CHECK={python=3.8.3}, TRIMGALORE={cutadapt=3.4, trimgalore=0.6.7}, Workflow={nf-core/methylseq=2.5.0dev}}"
+            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, TRIMGALORE={cutadapt=3.4, trimgalore=0.6.7}, Workflow={nf-core/methylseq=2.5.0dev}}"
         ],
-        "timestamp": "2023-06-01T02:27:54+0000"
+        "timestamp": "2023-08-25T19:47:04+0000"
     },
     "single_end_nomeseq_software_versions": {
         "content": [
-            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, SAMPLESHEET_CHECK={python=3.8.3}, TRIMGALORE={cutadapt=3.4, trimgalore=0.6.7}, Workflow={nf-core/methylseq=2.5.0dev}}"
+            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, TRIMGALORE={cutadapt=3.4, trimgalore=0.6.7}, Workflow={nf-core/methylseq=2.5.0dev}}"
         ],
-        "timestamp": "2023-06-01T02:27:54+0000"
+        "timestamp": "2023-08-25T19:47:04+0000"
     },
     "single_end_nomeseq": {
         "content": [
@@ -26,13 +26,13 @@
             "genome_results.txt:md5,79287f69ff6c8a308f0bb988c97f0e15",
             "genome_results.txt:md5,29e911b75d7160e964530e9607110164"
         ],
-        "timestamp": "2023-06-01T02:27:54+0000"
+        "timestamp": "2023-08-25T19:47:04+0000"
     },
     "single_end_rrbs_software_versions": {
         "content": [
-            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, SAMPLESHEET_CHECK={python=3.8.3}, Workflow={nf-core/methylseq=2.5.0dev}}"
+            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, Workflow={nf-core/methylseq=2.5.0dev}}"
         ],
-        "timestamp": "2023-06-01T02:27:54+0000"
+        "timestamp": "2023-08-25T19:47:04+0000"
     },
     "single_end": {
         "content": [
@@ -43,7 +43,7 @@
             "genome_results.txt:md5,79287f69ff6c8a308f0bb988c97f0e15",
             "genome_results.txt:md5,29e911b75d7160e964530e9607110164"
         ],
-        "timestamp": "2023-06-01T02:27:54+0000"
+        "timestamp": "2023-08-25T19:47:04+0000"
     },
     "single_end_rrbs": {
         "content": [
@@ -54,6 +54,6 @@
             "genome_results.txt:md5,7a86634fd1c768d8302e071088641815",
             "genome_results.txt:md5,9e9b6841f3b3a46a299c61c516aa125e"
         ],
-        "timestamp": "2023-06-01T02:27:54+0000"
+        "timestamp": "2023-08-25T19:47:04+0000"
     }
 }
diff --git a/tests/pipeline/bismark_hisat/main.nf.test.snap b/tests/pipeline/bismark_hisat/main.nf.test.snap
@@ -1,15 +1,15 @@
 {
     "single_end_software_versions": {
         "content": [
-            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, SAMPLESHEET_CHECK={python=3.8.3}, TRIMGALORE={cutadapt=3.4, trimgalore=0.6.7}, Workflow={nf-core/methylseq=2.5.0dev}}"
+            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, TRIMGALORE={cutadapt=3.4, trimgalore=0.6.7}, Workflow={nf-core/methylseq=2.5.0dev}}"
         ],
-        "timestamp": "2023-06-01T02:43:30+0000"
+        "timestamp": "2023-08-25T19:31:06+0000"
     },
     "single_end_rrbs_software_versions": {
         "content": [
-            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, SAMPLESHEET_CHECK={python=3.8.3}, Workflow={nf-core/methylseq=2.5.0dev}}"
+            "{BISMARK_ALIGN={bismark=0.24.0}, BISMARK_GENOMEPREPARATION={bismark=0.24.0}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, Workflow={nf-core/methylseq=2.5.0dev}}"
         ],
-        "timestamp": "2023-06-01T02:43:30+0000"
+        "timestamp": "2023-08-25T19:31:06+0000"
     },
     "single_end": {
         "content": [
@@ -20,7 +20,7 @@
             "genome_results.txt:md5,9956ed1dcf51e6975f4a6ab8fe156aba",
             "genome_results.txt:md5,1133ea5d1376389c6a17def89d2e90ec"
         ],
-        "timestamp": "2023-06-01T02:43:30+0000"
+        "timestamp": "2023-08-25T19:31:06+0000"
     },
     "single_end_rrbs": {
         "content": [
@@ -31,6 +31,6 @@
             "genome_results.txt:md5,58a2aeeb5eacca4c766bb23fee8f9013",
             "genome_results.txt:md5,473022a29cf12d97e75451a4eea67c02"
         ],
-        "timestamp": "2023-06-01T02:43:30+0000"
+        "timestamp": "2023-08-25T19:31:06+0000"
     }
 }
diff --git a/tests/pipeline/bwameth/main.nf.test.snap b/tests/pipeline/bwameth/main.nf.test.snap
@@ -1,15 +1,15 @@
 {
     "single_end_software_versions": {
         "content": [
-            "{BWAMETH_ALIGN={bwameth=0.2.2}, BWAMETH_INDEX={bwameth=0.2.2}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, SAMPLESHEET_CHECK={python=3.8.3}, TRIMGALORE={cutadapt=3.4, trimgalore=0.6.7}, Workflow={nf-core/methylseq=2.5.0dev}}"
+            "{BWAMETH_ALIGN={bwameth=0.2.2}, BWAMETH_INDEX={bwameth=0.2.2}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, TRIMGALORE={cutadapt=3.4, trimgalore=0.6.7}, Workflow={nf-core/methylseq=2.5.0dev}}"
         ],
-        "timestamp": "2023-05-28T00:53:43+0000"
+        "timestamp": "2023-08-25T19:53:02+0000"
     },
     "single_end_rrbs_software_versions": {
         "content": [
-            "{BWAMETH_ALIGN={bwameth=0.2.2}, BWAMETH_INDEX={bwameth=0.2.2}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, SAMPLESHEET_CHECK={python=3.8.3}, Workflow={nf-core/methylseq=2.5.0dev}}"
+            "{BWAMETH_ALIGN={bwameth=0.2.2}, BWAMETH_INDEX={bwameth=0.2.2}, CAT_FASTQ={cat=8.30}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.11.0, yaml=6.0}, FASTQC={fastqc=0.11.9}, QUALIMAP_BAMQC={qualimap=2.2.2-dev}, Workflow={nf-core/methylseq=2.5.0dev}}"
         ],
-        "timestamp": "2023-05-28T00:53:43+0000"
+        "timestamp": "2023-08-25T19:53:02+0000"
     },
     "single_end": {
         "content": [
@@ -23,7 +23,7 @@
             "genome_results.txt:md5,2c755b15ae5ad4a1d29395320a6264ca",
             "genome_results.txt:md5,3c7d14ea070df510941c55f72706a7a0"
         ],
-        "timestamp": "2023-05-28T00:53:43+0000"
+        "timestamp": "2023-08-25T19:53:02+0000"
     },
     "single_end_rrbs": {
         "content": [
@@ -37,6 +37,6 @@
             "genome_results.txt:md5,f01c68dd46ca9ec0af3d6ec926763b75",
             "genome_results.txt:md5,f4513f5aa1622937ccdcfe92a6f877c0"
         ],
-        "timestamp": "2023-05-28T00:53:43+0000"
+        "timestamp": "2023-08-25T19:53:02+0000"
     }
 }