Merge pull request #434 from sateeshperi/dev

update spacing in nextflow.config to test nf-test trigger
nf-core · Oct 22, 2024 · bafe246 · bafe246
2 parents 25061bf + 6f3beec
commit bafe246
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Showing 2 changed files with 7 additions and 13 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -50,12 +50,6 @@ jobs:
             profile: "conda"
           - isMaster: false
             profile: "singularity"
-          - profile: "conda"
-            nf_test_files: "tests/bwameth_save_reference_save_align_intermeds.nf.test"
-          - profile: "conda"
-            nf_test_files: "tests/bwameth_skip_trimming.nf.test"
-          - profile: "conda"
-            nf_test_files: "tests/bwameth_skip_deduplication.nf.test"
     steps:
       - name: Check out pipeline code
         uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4

diff --git a/nextflow.config b/nextflow.config
@@ -102,16 +102,16 @@ params {
     pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/methylseq'
 
     // Config options
-    config_profile_name        = null
-    config_profile_description = null
+    config_profile_name          = null
+    config_profile_description   = null
 
-    custom_config_version      = 'master'
-    custom_config_base         = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}"
-    config_profile_contact     = null
-    config_profile_url         = null
+    custom_config_version        = 'master'
+    custom_config_base           = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}"
+    config_profile_contact       = null
+    config_profile_url           = null
 
     // Schema validation default options
-    validate_params            = true
+    validate_params              = true
 }
 
 // Load base.config by default for all pipelines