Merge pull request #343 from nf-core/maxulysse-patch-1

Support pipeline-specific configs
nf-core · Sep 21, 2023 · c5bbf8e · c5bbf8e
2 parents 89b0aa4 + 1737eda
commit c5bbf8e
Showing 1 changed file with 6 additions and 5 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -133,11 +133,12 @@ try {
 
 // Load nf-core/methylseq custom profiles from different institutions.
 // Warning: Uncomment only if a pipeline-specific instititutional config already exists on nf-core/configs!
-// try {
-//   includeConfig "${params.custom_config_base}/pipeline/methylseq.config"
-// } catch (Exception e) {
-//   System.err.println("WARNING: Could not load nf-core/config/methylseq profiles: ${params.custom_config_base}/pipeline/methylseq.config")
-// }
+try {
+  includeConfig "${params.custom_config_base}/pipeline/methylseq.config"
+} catch (Exception e) {
+  System.err.println("WARNING: Could not load nf-core/config/methylseq profiles: ${params.custom_config_base}/pipeline/methylseq.config")
+}
+
 profiles {
     debug {
         dumpHashes             = true