update and fix linting

nf-core · Nov 18, 2024 · 3537da5 · 3537da5
1 parent 0d8c243
commit 3537da5
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diff --git a/modules/nf-core/crabs/insilicopcr/environment.yml b/modules/nf-core/crabs/insilicopcr/environment.yml
@@ -2,4 +2,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::crabs==1.0.4
+  - bioconda::crabs=1.0.6
diff --git a/modules/nf-core/crabs/insilicopcr/main.nf b/modules/nf-core/crabs/insilicopcr/main.nf
@@ -4,8 +4,8 @@ process CRABS_INSILICOPCR {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/e0/e0007b6b35c9783203b7fde287c383ac38168ecfee79639393e3cb1cd4afdaef/data':
-        'community.wave.seqera.io/library/crabs:1.0.4--1de4f5571e3e4ab0' }"
+        'oras://community.wave.seqera.io/library/crabs:1.0.6--a95c7815a4a67eb2':
+        'community.wave.seqera.io/library/crabs:1.0.6--462aa28d85ee454e' }"
 
     input:
     tuple val(meta), path(fasta)

diff --git a/modules/nf-core/crabs/insilicopcr/meta.yml b/modules/nf-core/crabs/insilicopcr/meta.yml
@@ -1,5 +1,6 @@
 name: crabs_insilicopcr
-description: CRABS extracts the amplicon region of the primer set by conducting an in silico PCR.
+description: CRABS extracts the amplicon region of the primer set by conducting an
+  in silico PCR.
 keywords:
   - insilico
   - PCR
@@ -16,33 +17,34 @@ tools:
       tool_dev_url: https://github.com/gjeunen/reference_database_creator
       doi: 10.1111/1755-0998.13741
       licence: ["MIT License"]
+      identifier: ""
 
 input:
-  - meta:
-      type: map
-      description: |
-        Groovy Map containing sample information
-        e.g. `[ id:'sample1' ]`
-  - fasta:
-      type: file
-      description: Sequence to conduct in silico PCR on
-      pattern: "*.{fa,fasta}"
-
+  - - meta:
+        type: map
+        description: |
+          Groovy Map containing sample information
+          e.g. `[ id:'sample1' ]`
+    - fasta:
+        type: file
+        description: Sequence to conduct in silico PCR on
+        pattern: "*.{fa,fasta}"
 output:
-  - meta:
-      type: map
-      description: |
-        Groovy Map containing sample information
-        e.g. `[ id:'sample1' ]`
-  - versions:
-      type: file
-      description: File containing software versions
-      pattern: "versions.yml"
   - fasta:
-      type: file
-      description: Reverse complemented amplified Sequence
-      pattern: "*.{fa,fasta}"
-
+      - meta:
+          type: map
+          description: |
+            Groovy Map containing sample information
+            e.g. `[ id:'sample1' ]`
+      - "*.{fa,fasta}":
+          type: file
+          description: Reverse complemented amplified Sequence
+          pattern: "*.{fa,fasta}"
+  - versions:
+      - versions.yml:
+          type: file
+          description: File containing software versions
+          pattern: "versions.yml"
 authors:
   - "@famosab"
   - "@a4000"