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Align parabricks subworkflow #6876

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Align parabricks subworkflow #6876

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Commits on Oct 28, 2024

  1. add parabricks

    @famosab
    famosab committed Oct 28, 2024
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  2. remove config tag

    @famosab
    famosab committed Oct 28, 2024
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  3. fix typo

    @famosab
    famosab committed Oct 28, 2024
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  4. fix typo

    @famosab
    famosab committed Oct 28, 2024
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  5. fix typo

    @famosab
    famosab committed Oct 28, 2024
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  6. update paths

    @famosab
    famosab committed Oct 28, 2024
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  7. update paths

    @famosab
    famosab committed Oct 28, 2024
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  8. remove ch

    @famosab
    famosab committed Oct 28, 2024
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Commits on Oct 29, 2024

  1. change gpu access

    @famosab
    famosab committed Oct 29, 2024
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  2. change fasta

    @famosab
    famosab committed Oct 29, 2024
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  3. update container

    @famosab
    famosab committed Oct 29, 2024
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  4. low memory

    @famosab
    famosab committed Oct 29, 2024
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  5. indey

    @famosab
    famosab committed Oct 29, 2024
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  6. index bwamem

    @famosab
    famosab committed Oct 29, 2024
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  7. index bwamem

    @famosab
    famosab committed Oct 29, 2024
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  8. index bwa

    @famosab
    famosab committed Oct 29, 2024
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  9. add index file

    @famosab
    famosab committed Oct 29, 2024
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  10. add index file

    @famosab
    famosab committed Oct 29, 2024
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  11. add index file

    @famosab
    famosab committed Oct 29, 2024
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  12. add index file

    @famosab
    famosab committed Oct 29, 2024
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  13. stage in

    @famosab
    famosab committed Oct 29, 2024
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  14. stage in

    @famosab
    famosab committed Oct 29, 2024
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  15. workdir

    @famosab
    famosab committed Oct 29, 2024
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  16. revert workdir

    @famosab
    famosab committed Oct 29, 2024
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  17. revert workdir

    @famosab
    famosab committed Oct 29, 2024
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  18. add bwa index

    @famosab
    famosab committed Oct 29, 2024
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  19. add bwa index link

    @famosab
    famosab committed Oct 29, 2024
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  20. add bwa index link

    @famosab
    famosab committed Oct 29, 2024
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  21. add bwa index link

    @famosab
    famosab committed Oct 29, 2024
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  22. rm stage

    @famosab
    famosab committed Oct 29, 2024
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  23. please work now

    @famosab
    famosab committed Oct 29, 2024
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Commits on Oct 30, 2024

  1. remove fq2bam from this PR

    @famosab
    famosab committed Oct 30, 2024
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  2. Merge branch 'master' into parabricks-sbwf

    @famosab
    famosab authored Oct 30, 2024
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  3. update tests

    @famosab
    famosab committed Oct 30, 2024
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  4. change inputs in test and to fq2bam

    @famosab
    famosab committed Oct 30, 2024
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  5. add low memory

    @famosab
    famosab committed Oct 30, 2024
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  6. adjust applybqsr input

    @famosab
    famosab committed Oct 30, 2024
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  7. adjust io to be consistent

    @famosab
    famosab committed Oct 30, 2024
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  8. Merge branch 'master' into parabricks-sbwf

    @famosab
    famosab authored Oct 30, 2024
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Commits on Nov 15, 2024

  1. Merge branch 'master' into parabricks-sbwf

    @famosab
    famosab authored Nov 15, 2024
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Commits on Nov 18, 2024

  1. Merge branch 'master' into parabricks-sbwf

    @famosab
    famosab authored Nov 18, 2024
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  2. wip

    @famosab
    famosab committed Nov 18, 2024
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  3. Merge branch 'parabricks-sbwf' of github.com:famosab/modules into par… 

    …abricks-sbwf
    @famosab
    famosab committed Nov 18, 2024
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  4. try applybqsr

    @famosab
    famosab committed Nov 18, 2024
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  5. Merge branch 'master' into parabricks-sbwf

    @famosab
    famosab authored Nov 18, 2024
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  6. minor updates

    @sateeshperi
    sateeshperi committed Nov 18, 2024
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  7. update snap

    @famosab
    famosab committed Nov 18, 2024
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  8. update snap

    @famosab
    famosab committed Nov 18, 2024
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