Merge pull request #205 from luisas/update_input_schema

Update schema

CHANGELOG.md

@@ -72,6 +72,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
 - [[PR ##163](https://github.com/nf-core/proteinfold/pull/163)] - Fix full test CI.
 - [[#150]](https://github.com/nf-core/proteinfold/issues/150)] - Add thanks to the AWS Open Data Sponsorship program in `README.md`.
 - [[PR ##166](https://github.com/nf-core/proteinfold/pull/166)] - Create 2 different parameters for Colabfold and ESMfold number of recycles.
+- [[PR ##205](https://github.com/nf-core/proteinfold/pull/205)] - Change input schema from `sequence,fasta` to `id,fasta`.
 
 ### Parameters
 

assets/schema_input.json

@@ -7,7 +7,7 @@
     "items": {
         "type": "object",
         "properties": {
-            "sequence": {
+            "id": {
                 "type": "string",
                 "pattern": "^\\S+$",
                 "errorMessage": "Sequence name must be provided and cannot contain spaces",
@@ -21,6 +21,6 @@
                 "errorMessage": "Fasta file must be provided, cannot contain spaces and must have extension '.fa' or '.fasta'"
             }
         },
-        "required": ["sequence", "fasta"]
+        "required": ["id", "fasta"]
     }
 }

docs/usage.md

@@ -28,10 +28,10 @@ T1026,https://raw.githubusercontent.com/nf-core/test-datasets/proteinfold/testda
 
 The samplesheet can have as many columns as you desire, however, there is a strict requirement for the first 2 columns to match those defined in the table below:
 
-| Column     | Description                                                                                         |
-| ---------- | --------------------------------------------------------------------------------------------------- |
-| `sequence` | Custom sequence name. Spaces in sequence names are automatically converted to underscores (`_`).    |
-| `fasta`    | Full path to fasta file for the provided sequence. File has to have the extension ".fasta" or "fa". |
+| Column  | Description                                                                                         |
+| ------- | --------------------------------------------------------------------------------------------------- |
+| `id`    | Custom sequence name. Spaces in sequence names are automatically converted to underscores (`_`).    |
+| `fasta` | Full path to fasta file for the provided sequence. File has to have the extension ".fasta" or "fa". |
 
 An [example samplesheet](../assets/samplesheet.csv) has been provided with the pipeline.