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Fixing formatting that was causing issues with linting
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atrull314 committed Oct 4, 2023
1 parent 9fb8c38 commit c911f71
Showing 1 changed file with 20 additions and 22 deletions.
42 changes: 20 additions & 22 deletions assets/multiqc_config.yml
Original file line number Diff line number Diff line change
@@ -1,16 +1,25 @@
report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/scnanoseq/1.0.0dev" target="_blank">nf-core/scnanoseq</a>
This report has been generated by the <a href="https://github.com/nf-core/scnanoseq/0.1.0dev" target="_blank">nf-core/scnanoseq</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/scnanoseq/1.0.0dev/output" target="_blank">documentation</a>.
report_section_order:
"nf-core-scnanoseq-methods-description":
order: -1000
software_versions:
order: -1001
"nf-core-scnanoseq-summary":
order: -1002
<a href="https://nf-co.re/scnanoseq/0.1.0dev/output" target="_blank">documentation</a>.
log_filesize_limit: 100000000
report_section_order:
"nf-core-scnanoseq-methods-description":
order: -1000
software_versions:
order: -1001
"nf-core-scnanoseq-summary":
order: -1002
fastqc_postextract_fastqc_per_base_sequence_quality: remove
fastqc_postextract_fastqc_per_sequence_quality_scores: remove
fastqc_postextract_fastqc_per_base_sequence_content: remove
fastqc_postextract_fastqc_per_sequence_gc_content: remove
fastqc_postextract_fastqc_per_base_n_content: remove
fastqc_postextract_fastqc_sequence_length_distribution: remove
fastqc_postextract_fastqc_sequence_duplication_levels: remove
fastqc_postextract_fastqc_overrepresented_sequences: remove
fastqc_postextract_fastqc_adapter_content: remove
fastqc_postextract_fastqc_status_checks: remove

export_plots: true

Expand Down Expand Up @@ -39,18 +48,6 @@ top_modules:
path_filters:
- "*umi_extract*fastqc*"

report_section_order:
fastqc_postextract_fastqc_per_base_sequence_quality: remove
fastqc_postextract_fastqc_per_sequence_quality_scores: remove
fastqc_postextract_fastqc_per_base_sequence_content: remove
fastqc_postextract_fastqc_per_sequence_gc_content: remove
fastqc_postextract_fastqc_per_base_n_content: remove
fastqc_postextract_fastqc_sequence_length_distribution: remove
fastqc_postextract_fastqc_sequence_duplication_levels: remove
fastqc_postextract_fastqc_overrepresented_sequences: remove
fastqc_postextract_fastqc_adapter_content: remove
fastqc_postextract_fastqc_status_checks: remove

section_comments:
fastqc_posttrim: "Please note that if 'prowler' is selected as the trimming
method, these qc's should be looked at closely. Prowler does not
Expand Down Expand Up @@ -93,3 +90,4 @@ sp:
fn: "gene.*.tsv"
transcript_seurat_stats_module:
fn: "transcript.*.tsv"

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