change global variable used

nf-core · Apr 30, 2024 · 118d754 · 118d754
1 parent 9f0d8db
commit 118d754
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/tests/main_pipeline_cellrangermulti.test b/tests/main_pipeline_cellrangermulti.test
@@ -11,9 +11,9 @@ nextflow_pipeline {
                 aligner                   = 'cellrangermulti'
                 outdir                    = "${outputDir}/results_cellrangermulti"
                 input                     = "${baseDir}/assets/cellrangermulti_samplesheet.csv"
-                cellranger_multi_barcodes = "${projectDir}/assets/cellranger_barcodes_samplesheet.csv"
-                gex_frna_probe_set        = "${projectDir}/assets/frna_probeset_subset.csv"
-                fb_reference              = "${projectDir}/assets/fb_reference.csv"
+                cellranger_multi_barcodes = "${baseDir}/assets/cellranger_barcodes_samplesheet.csv"
+                gex_frna_probe_set        = "${baseDir}/assets/frna_probeset_subset.csv"
+                fb_reference              = "${baseDir}/assets/fb_reference.csv"
                 fasta                     = 'https://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.chromosome.2.fa.gz'
                 gtf                       = 'https://ftp.ensembl.org/pub/release-110/gtf/homo_sapiens/Homo_sapiens.GRCh38.110.gtf.gz'
                 aligner                   = 'cellrangermulti'