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Add support for generating mag samplesheet #1925

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Add support for generating mag samplesheet

Add support for generating mag samplesheet #1925

Run time

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Job Run time
Run pipeline with test data (23.04.0, test)
2m 36s
Run pipeline with test data (23.04.0, test_nopreprocessing)
18m 17s
Run pipeline with test data (23.04.0, test_noprofiling)
7m 42s
Run pipeline with test data (23.04.0, test_krakenuniq)
9m 31s
Run pipeline with test data (23.04.0, test_malt)
5m 56s
Run pipeline with test data (23.04.0, test_motus)
25m 50s
Run pipeline with test data (23.04.0, test_falco)
5m 32s
Run pipeline with test data (23.04.0, test_fastp)
11m 56s
Run pipeline with test data (23.04.0, test_alternativepreprocessing)
14m 58s
Run pipeline with test data (23.04.0, test_bbduk)
11m 46s
Run pipeline with test data (23.04.0, test_prinseqplusplus)
11m 12s
Run pipeline with test data (latest-everything, test)
3m 53s
Run pipeline with test data (latest-everything, test_nopreprocessing)
18m 38s
Run pipeline with test data (latest-everything, test_noprofiling)
7m 54s
Run pipeline with test data (latest-everything, test_krakenuniq)
10m 46s
Run pipeline with test data (latest-everything, test_malt)
5m 43s
Run pipeline with test data (latest-everything, test_motus)
27m 46s
Run pipeline with test data (latest-everything, test_falco)
5m 34s
Run pipeline with test data (latest-everything, test_fastp)
12m 9s
Run pipeline with test data (latest-everything, test_alternativepreprocessing)
13m 28s
Run pipeline with test data (latest-everything, test_bbduk)
13m 34s
Run pipeline with test data (latest-everything, test_prinseqplusplus)
12m 13s
4h 16m 54s