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Fix CENTRIFUGE header modification when --out-fmt turned on #1095

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Fix CENTRIFUGE header modification when --out-fmt turned on

Fix CENTRIFUGE header modification when --out-fmt turned on #1095

Triggered via pull request July 27, 2023 12:00
@jfy133jfy133
opened #338
centrifuge-fix
Status Cancelled
Total duration 53s
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ci.yml

on: pull_request
Matrix: Test KrakenUniq with workflow parameters
Matrix: Test MALT with workflow parameters
Matrix: Test mOTUs with workflow parameters
Matrix: Run pipeline with test data
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16 errors and 16 warnings
Run pipeline with test data (latest-everything, --shortread_qc_tool fastp)
The operation was canceled.
Test mOTUs with workflow parameters (23.04.0)
The operation was canceled.
Run pipeline with test data (23.04.0, --shortread_complexityfilter_tool prinseqplusplus)
The operation was canceled.
Run pipeline with test data (23.04.0, --shortread_complexityfilter_tool bbduk)
The operation was canceled.
Test KrakenUniq with workflow parameters (23.04.0)
The operation was canceled.
Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool prinseqplusplus)
The operation was canceled.
Run pipeline with test data (23.04.0, --preprocessing_qc_tool falco)
The operation was canceled.
Run pipeline with test data (latest-everything, --shortread_qc_tool adapterremoval)
The operation was canceled.
Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool bbduk)
The operation was canceled.
Run pipeline with test data (23.04.0, --shortread_qc_tool adapterremoval)
The operation was canceled.
Run pipeline with test data (23.04.0, --shortread_qc_tool fastp)
The operation was canceled.
Test KrakenUniq with workflow parameters (latest-everything)
The operation was canceled.
Run pipeline with test data (latest-everything, --preprocessing_qc_tool falco)
The operation was canceled.
Test MALT with workflow parameters (latest-everything)
The operation was canceled.
Test MALT with workflow parameters (23.04.0)
The operation was canceled.
Test mOTUs with workflow parameters (latest-everything)
The operation was canceled.
Run pipeline with test data (latest-everything, --shortread_qc_tool fastp)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test mOTUs with workflow parameters (23.04.0)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (23.04.0, --shortread_complexityfilter_tool prinseqplusplus)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (23.04.0, --shortread_complexityfilter_tool bbduk)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test KrakenUniq with workflow parameters (23.04.0)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool prinseqplusplus)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (23.04.0, --preprocessing_qc_tool falco)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (latest-everything, --shortread_qc_tool adapterremoval)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool bbduk)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (23.04.0, --shortread_qc_tool adapterremoval)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (23.04.0, --shortread_qc_tool fastp)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test KrakenUniq with workflow parameters (latest-everything)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Run pipeline with test data (latest-everything, --preprocessing_qc_tool falco)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test MALT with workflow parameters (latest-everything)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test MALT with workflow parameters (23.04.0)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test mOTUs with workflow parameters (latest-everything)
The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected], actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/