nf-core CI

Function for mapcombinemultimap #1099

Triggered via pull request July 27, 2023 13:01

jfy133

opened #339

function-for-mapcombinemultimap

Status Failure

Total duration 39m 23s

Artifacts –

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ci.yml

on: pull_request

Matrix: Test KrakenUniq with workflow parameters

Matrix: Test MALT with workflow parameters

Matrix: Test mOTUs with workflow parameters

Matrix: Run pipeline with test data

Annotations

10 errors and 16 warnings

Run pipeline with test data (23.04.0, --shortread_qc_tool adapterremoval)

Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_qc_tool adapterremoval" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:01:56 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:02:16 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:35 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool bbduk)

Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_complexityfilter_tool bbduk" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:01:58 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:02:20 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:37 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool prinseqplusplus)

Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_complexityfilter_tool prinseqplusplus" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:01:57 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:02:19 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:39 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, --preprocessing_qc_tool falco)

Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --preprocessing_qc_tool falco" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:02:02 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:02:24 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:43 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, --shortread_qc_tool fastp)

Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_qc_tool fastp" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:02:02 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:02:24 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:43 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, --shortread_complexityfilter_tool bbduk)

Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_complexityfilter_tool bbduk" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:02:04 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:02:26 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:46 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (latest-everything, --shortread_qc_tool adapterremoval)

Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_qc_tool adapterremoval" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:02:04 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:02:25 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:45 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (latest-everything, --preprocessing_qc_tool falco)

Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --preprocessing_qc_tool falco" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:02:08 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:02:31 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:50 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (latest-everything, --shortread_qc_tool fastp)

Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_qc_tool fastp" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:02:09 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:02:33 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:51 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, --shortread_complexityfilter_tool prinseqplusplus)

Process returned exit code 1 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --outdir ./results --shortread_complexityfilter_tool prinseqplusplus" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:02:08 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:02:34 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:57 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, --shortread_qc_tool adapterremoval)

The following actions uses node12 which is deprecated and will be forced to run on node16: Wandalen/[email protected]. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool bbduk)