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Fix CENTRIFUGE header modification when --out-fmt turned on #1100

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Fix CENTRIFUGE header modification when --out-fmt turned on

Fix CENTRIFUGE header modification when --out-fmt turned on #1100

Run time

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Job Run time
Run pipeline with test data (23.04.0, --preprocessing_qc_tool falco)
34m 31s
Run pipeline with test data (23.04.0, --shortread_qc_tool fastp)
29m 26s
Run pipeline with test data (23.04.0, --shortread_qc_tool adapterremoval)
30m 2s
Run pipeline with test data (23.04.0, --shortread_complexityfilter_tool bbduk)
39m 39s
Run pipeline with test data (23.04.0, --shortread_complexityfilter_tool prinseqplusplus)
36m 5s
Run pipeline with test data (latest-everything, --preprocessing_qc_tool falco)
26m 59s
Run pipeline with test data (latest-everything, --shortread_qc_tool fastp)
28m 22s
Run pipeline with test data (latest-everything, --shortread_qc_tool adapterremoval)
32m 23s
Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool bbduk)
32m 57s
Run pipeline with test data (latest-everything, --shortread_complexityfilter_tool prinseqplusplus)
40m 26s
Test KrakenUniq with workflow parameters (23.04.0)
15m 51s
Test KrakenUniq with workflow parameters (latest-everything)
13m 43s
Test MALT with workflow parameters (23.04.0)
18m 38s
Test MALT with workflow parameters (latest-everything)
12m 58s
Test mOTUs with workflow parameters (23.04.0)
45m 45s
Test mOTUs with workflow parameters (latest-everything)
48m 45s
8h 6m 30s