nf-core CI

Separate CI tests #1142

Triggered via pull request August 9, 2023 11:08

LilyAnderssonLee

synchronize #350

CI_test

Status Cancelled

Total duration 4m 58s

Artifacts –

ci.yml

on: pull_request

Matrix: Run pipeline with test data

Annotations

188 errors and 75 warnings

Run pipeline with test data (23.04.0, test_krakenuniq, --preprocessing_qc_tool=falco, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_krakenuniq,docker --preprocessing_qc_tool=falco ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:22 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:22 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:22 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_full, --shortread_qc_tool=adapterremoval, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_full,docker --shortread_qc_tool=adapterremoval ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:22 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:22 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:22 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_noprofiling, --shortread_complexityfilter_tool=prinseq...

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_noprofiling,docker --shortread_complexityfilter_tool=prinseqplusplus ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:22 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:23 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_full, --shortread_complexityfilter_tool=prinseqplusplu...

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_full,docker --shortread_complexityfilter_tool=prinseqplusplus ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:23 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_noprofiling, --shortread_qc_tool=fastp, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_noprofiling,docker --shortread_qc_tool=fastp ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:23 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_krakenuniq, --shortread_complexityfilter_tool=bbduk, d...

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_krakenuniq,docker --shortread_complexityfilter_tool=bbduk ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:22 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:23 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test, --shortread_qc_tool=fastp, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --shortread_qc_tool=fastp ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:23 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_nopreprocessing, --shortread_complexityfilter_tool=pri...

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_nopreprocessing,docker --shortread_complexityfilter_tool=prinseqplusplus ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:23 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_malt, --shortread_qc_tool=fastp, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_malt,docker --shortread_qc_tool=fastp ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:23 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_full, --preprocessing_qc_tool=falco, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_full,docker --preprocessing_qc_tool=falco ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:23 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (latest-everything, test_krakenuniq, --preprocessing_qc_tool=falco, d...

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_krakenuniq,docker --preprocessing_qc_tool=falco ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:24 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:24 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:24 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_malt, --shortread_complexityfilter_tool=bbduk, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_malt,docker --shortread_complexityfilter_tool=bbduk ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:23 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:24 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:24 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (latest-everything, test_krakenuniq, --shortread_complexityfilter_too...

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_krakenuniq,docker --shortread_complexityfilter_tool=prinseqplusplus ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:24 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:24 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:25 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_nopreprocessing, --shortread_qc_tool=adapterremoval, d...

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_nopreprocessing,docker --shortread_qc_tool=adapterremoval ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:24 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:25 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:25 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_nothing, --shortread_qc_tool=adapterremoval, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_nothing,docker --shortread_qc_tool=adapterremoval ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:25 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:25 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:25 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_nopreprocessing, --preprocessing_qc_tool=falco, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_nopreprocessing,docker --preprocessing_qc_tool=falco ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:26 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:26 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:26 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_noprofiling, --shortread_complexityfilter_tool=bbduk, ...

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_noprofiling,docker --shortread_complexityfilter_tool=bbduk ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:26 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:26 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:26 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_krakenuniq, --shortread_qc_tool=adapterremoval, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_krakenuniq,docker --shortread_qc_tool=adapterremoval ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:26 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:26 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:26 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (latest-everything, test_full, --shortread_qc_tool=adapterremoval, do...

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_full,docker --shortread_qc_tool=adapterremoval ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:26 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:26 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:26 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test, --shortread_complexityfilter_tool=bbduk, docker)

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test,docker --shortread_complexityfilter_tool=bbduk ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:27 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:27 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:27 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (23.04.0, test_krakenuniq, --shortread_complexityfilter_tool=prinseqp...

Process returned exit code 2 Launched as "nextflow run ${GITHUB_WORKSPACE} -profile test_krakenuniq,docker --shortread_complexityfilter_tool=prinseqplusplus ${" Launched at "/home/runner/work/taxprofiler/taxprofiler" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:09:29 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:09:29 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:09:29 GMT+0000 (Coordinated Universal Time)

Run pipeline with test data (latest-everything, test, --shortread_qc_tool=adapterremoval, docker)

The run was canceled by @LilyAnderssonLee.

Run pipeline with test data (latest-everything, test, --shortread_complexityfilter_tool=bbduk, do...

The run was canceled by @LilyAnderssonLee.

Run pipeline with test data (latest-everything, test, --shortread_complexityfilter_tool=prinseqpl...

The run was canceled by @LilyAnderssonLee.

Run pipeline with test data (latest-everything, test, --shortread_qc_tool=fastp, docker)

The run was canceled by @LilyAnderssonLee.

Run pipeline with test data (latest-everything, test, --preprocessing_qc_tool=falco, docker)

The run was canceled by @LilyAnderssonLee.

Run pipeline with test data (23.04.0, test_full, --shortread_qc_tool=fastp, docker)

Could not retrieve Nextflow release matching 23.04.0. API rate limit exceeded for installation ID 1565271.

Run pipeline with test data (23.04.0, test_full, --shortread_qc_tool=fastp, docker)