Merge template 2.13 #14
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| name: nf-core AWS full size tests | ||
| # This workflow is triggered on published releases. | ||
| # It can be additionally triggered manually with GitHub actions workflow dispatch button. | ||
| # It runs the -profile 'test_full' on AWS batch | ||
| on: | ||
| release: | ||
| types: [published] | ||
| workflow_dispatch: | ||
| jobs: | ||
| run-tower: | ||
| name: Run AWS full tests | ||
| if: github.repository == 'nf-core/taxprofiler' | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Launch workflow via tower | ||
| <<<<<<< HEAD | ||
| uses: seqeralabs/action-tower-launch@922e5c8d5ac4e918107ec311d2ebbd65e5982b3d # v2 | ||
| # TODO nf-core: You can customise AWS full pipeline tests as required | ||
| # Add full size test data (but still relatively small datasets for few samples) | ||
| # on the `test_full.config` test runs with only one set of parameters | ||
| ======= | ||
| uses: seqeralabs/action-tower-launch@v2 | ||
| >>>>>>> dev | ||
| with: | ||
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | ||
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | ||
| compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} | ||
| revision: ${{ github.sha }} | ||
| workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }} | ||
| parameters: | | ||
| { | ||
| "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | ||
| "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/taxprofiler/results-${{ github.sha }}" | ||
| } | ||
| profiles: test_full | ||
| - uses: actions/upload-artifact@5d5d22a31266ced268874388b861e4b58bb5c2f3 # v4 | ||
| with: | ||
| name: Tower debug log file | ||
| path: | | ||
| tower_action_*.log | ||
| tower_action_*.json | ||
