update configs and database schema

nf-core · Oct 24, 2024 · 00067f5 · 00067f5
1 parent fe84cc3
commit 00067f5
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Showing 14 changed files with 16 additions and 16 deletions.
diff --git a/README.md b/README.md
@@ -105,7 +105,7 @@ For more details about the output files and reports, please refer to the
 
 ## Credits
 
-nf-core/taxprofiler was originally written by James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, and the nf-core/taxprofiler team.
+nf-core/taxprofiler was originally written by James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, Lili Andersson-Li, and the nf-core/taxprofiler team.
 
 ### Team
 

diff --git a/assets/schema_database.json b/assets/schema_database.json
@@ -50,7 +50,7 @@
                 "errorMessage": "db_path should be either a file path or a directory."
             }
         },
-        "required": ["tool", "db_name", "db_path"],
-        "uniqueEntries": ["tool", "db_name"]
-    }
+        "required": ["tool", "db_name", "db_path"]
+    },
+    "uniqueEntries": ["tool", "db_name"]
 }
diff --git a/conf/test.config b/conf/test.config
@@ -14,7 +14,7 @@ process {
     resourceLimits = [
         cpus: 4,
         memory: '15.GB',
-        time: '1.h'
+        time: '6.h'
     ]
 }
 

diff --git a/conf/test_alternativepreprocessing.config b/conf/test_alternativepreprocessing.config
@@ -13,7 +13,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]

diff --git a/conf/test_bbduk.config b/conf/test_bbduk.config
@@ -13,7 +13,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]

diff --git a/conf/test_falco.config b/conf/test_falco.config
@@ -13,7 +13,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]

diff --git a/conf/test_fastp.config b/conf/test_fastp.config
@@ -13,7 +13,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]

diff --git a/conf/test_krakenuniq.config b/conf/test_krakenuniq.config
@@ -17,7 +17,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]

diff --git a/conf/test_malt.config b/conf/test_malt.config
@@ -17,7 +17,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]

diff --git a/conf/test_motus.config b/conf/test_motus.config
@@ -17,7 +17,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]

diff --git a/conf/test_nopreprocessing.config b/conf/test_nopreprocessing.config
@@ -13,7 +13,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]

diff --git a/conf/test_noprofiling.config b/conf/test_noprofiling.config
@@ -13,7 +13,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]

diff --git a/conf/test_nothing.config b/conf/test_nothing.config
@@ -13,7 +13,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]

diff --git a/conf/test_prinseqplusplus.config b/conf/test_prinseqplusplus.config
@@ -13,7 +13,7 @@
 process {
     // Limit resources so that this can run on GitHub Actions
     resourceLimits = [
-        cpus: 2,
+        cpus: 4,
         memory: '15.GB',
         time: '6.h'
     ]