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remove dump from profiling.nf
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LilyAnderssonLee committed Jun 25, 2024
1 parent 58ef246 commit 2534c08
Showing 1 changed file with 0 additions and 2 deletions.
2 changes: 0 additions & 2 deletions subworkflows/local/profiling.nf
Original file line number Diff line number Diff line change
Expand Up @@ -71,7 +71,6 @@ workflow PROFILING {
type, meta_db, db ->
[[type: type], meta_db.subMap(meta_db.keySet() - 'db_type') + [type: type], db]
}
.dump(tag: 'databases')

// Join short and long reads with their corresponding short/long database
// Note that for not-specified `short;long`, it will match with the database.
Expand All @@ -89,7 +88,6 @@ workflow PROFILING {
db_type, meta, reads, db_meta, db ->
[ meta, reads, db_meta, db ]
}
.dump(tag: 'input to profiling')
.branch { meta, reads, db_meta, db ->
centrifuge: db_meta.tool == 'centrifuge'
diamond: db_meta.tool == 'diamond'
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