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Update usage.md
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sofstam committed Aug 1, 2023
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Expand Up @@ -314,6 +314,10 @@ It is unclear whether ganon is suitable for running long reads - during testing

Therefore currently nf-core/taxprofiler does not run ganon on data specified as being sequenced with `OXFORD_NANOPORE` in the input samplesheet.

##### kmcp

KMCP is only suitable for short-read metagenomic profiling, with much lower sensitivity on long-read datasets. Therefore, nf-core/taxprofiler does not currently run kmcp on data specified as being sequenced with `OXFORD_NANOPORE` in the input samplesheet.

#### Post Processing

##### Visualisation
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