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christopher-hakkaart committed Nov 15, 2024
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23 changes: 12 additions & 11 deletions src/content/docs/checklists/community_governance/core_team.mdx
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Expand Up @@ -22,12 +22,12 @@ Instructions for nf-core pipeline approval:

Instructions for uploading full-test AWS files for a pipeline to a S3 bucket:

1. [ ] Check Valid test data that can be uploaded:
:::note
Small input data that may be unreliable when downloaded from other repositories (e.g., limit total file size to a maximum of 10 GB across all files).
:::
2. Check that large files that cannot be reduced or subsetted.
3. [ ] Create the pipeline directory in the S3 bucket and select the **Amazon S3-managed keys (SSE-S3)**.
1. [ ] Check Valid test data that can be uploaded:
:::note
Small input data that may be unreliable when downloaded from other repositories (e.g., limit total file size to a maximum of 10 GB across all files).
:::
2. Check that large files that cannot be reduced or subsetted.
3. [ ] Create the pipeline directory in the S3 bucket and select the **Amazon S3-managed keys (SSE-S3)**.

## Activating Zenodo archiving of a new pipeline

Expand All @@ -43,19 +43,20 @@ Before release:
2. [ ] Select **Settings -> GitHub -> Connect Account** and connect your GitHub account.
3. [ ] Once connected, select **Settings -> GitHub**.
4. [ ] Enable Zenodo archiving for all nf-core pipeline repositories by toggling the switch to **On** (including the one you want to assign).
:::note
It’s a good idea to enable this for all active pipelines, as DOIs will only be assigned upon release.
:::
:::note
It's a good idea to enable this for all active pipelines, as DOIs will only be assigned upon release.
:::

:::note
Some repositories (e.g., nf-core/exoseq) may not activate as they are archived.
:::

5. [ ] Inform the pipeline developers to make a release.

Post release:

1. [ ] Select **Settings -> Github** in Zenodo and find the relevant repository.
2. [ ] Click the Zenodo **Record** page for the release.
2. [ ] Click the Zenodo **Record** page for the release.
3. [ ] Find the **Communities** box on the record page and submit the record to the nf-core community.
4. [ ] Copy the DOI for **Cite all versions by using the DOI**.
5. [ ] Update files on the pipeline master branch:
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