[automated] Update json files and markdown cache

nf-core · Aug 3, 2023 · 471d6ae · 471d6ae
1 parent 0e82d61
commit 471d6ae
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Showing 3 changed files with 148 additions and 80 deletions.
diff --git a/.cache.tar.xz b/.cache.tar.xz
diff --git a/public/components.json b/public/components.json
@@ -76390,6 +76390,75 @@
         ]
       }
     },
+    {
+      "name": "seqkit_fx2tab",
+      "path": "modules/nf-core/seqkit/fx2tab/meta.yml",
+      "type": "module",
+      "meta": {
+        "name": "seqkit_fx2tab",
+        "description": "Convert FASTA/Q to tabular format, and provide various information, like sequence length, GC content/GC skew.",
+        "keywords": [
+          "fasta",
+          "fastq",
+          "text",
+          "tabular",
+          "convert"
+        ],
+        "tools": [
+          {
+            "seqkit": {
+              "description": "Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.\n",
+              "homepage": "https://github.com/shenwei356/seqkit",
+              "documentation": "https://bioinf.shenwei.me/seqkit/",
+              "doi": "10.1371/journal.pone.0163962",
+              "licence": [
+                "MIT"
+              ]
+            }
+          }
+        ],
+        "input": [
+          {
+            "meta": {
+              "type": "map",
+              "description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n"
+            }
+          },
+          {
+            "fastx": {
+              "type": "file",
+              "description": "Sequence file in fasta/q format",
+              "pattern": "*.{fasta,fastq,fa,fq,fas,fna,faa}[.gz,.zst]"
+            }
+          }
+        ],
+        "output": [
+          {
+            "meta": {
+              "type": "map",
+              "description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n"
+            }
+          },
+          {
+            "text": {
+              "type": "file",
+              "description": "Text file in tabular format",
+              "pattern": "*.txt[.gz,.zstd,.zst]"
+            }
+          },
+          {
+            "versions": {
+              "type": "file",
+              "description": "File containing software versions",
+              "pattern": "versions.yml"
+            }
+          }
+        ],
+        "authors": [
+          "@heuermh"
+        ]
+      }
+    },
     {
       "name": "seqkit_grep",
       "path": "modules/nf-core/seqkit/grep/meta.yml",