Remove mermaid for governance page #1900

Code block: modules.md

…mmunity Add advanced community event

Added schedule General update about room and building

Update WGC Advanced Training Page

Updated the collaboration section

docs: added nf-core/marsseq biorxiv

* master: [automated] Fix linting with Prettier Fix typo Added registration link Add schedule Code block: modules.md add extra for empty defaults Update WGC description update community training add training sept replace regex with simpler pagination approach [automated] Fix linting with Prettier use paginated github query Fetch 200 repos in one go instead of 100 # Conflicts: # update_pipeline_details.php

* main: Update about.md Update informatics-infrastructure.md Update add_team_projects.yaml

* master: docs: added nf-core/marsseq biorxiv # Conflicts: # markdown/publications.md

* merging_upstream: docs: added nf-core/marsseq biorxiv sanger-tol modules disabled now, switch back to nf-core modules remove debug informaiton [automated] Fix linting with Prettier Fix typo Added registration link Add schedule Code block: modules.md add extra for empty defaults Update WGC description update community training add training sept replace regex with simpler pagination approach [automated] Fix linting with Prettier use paginated github query Fetch 200 repos in one go instead of 100

- Change the end time - Add break

Add publication credit guidelines and make visible

…mmunity Update index.md

Co-authored-by: Gisela Gabernet <[email protected]>

Maintainers update

Add mamba and apptainer to docs

* main: Update genome_after_party_summary.md

Co-authored-by: Matthias Hörtenhuber <[email protected]>

only youtube links added

Update bytesize_workflow_safety.md

…r module page

… for deploy because we haven't set up the web server as ftp yet.

Update README.md

* main: change the lint branch to main, and remove the push and PR conditions for deploy because we haven't set up the web server as ftp yet. Change master to main Update readme about website development Update web-deploy.yml Update CONTRIBUTING.md Update README.md

Update bytesize_quantms.md

Update bytesize_mentoring.md

Update bytesize_python_packaging.md

Update bytesize_translations.md

…ython_package Bytesize transcript python package

Updating stats

…ualrnaseq Bytesize transcript dualrnaseq

…ultiqc bytesize transcript custom MultiQC

…SL2_pipeline_starter Bytesize transcript dsl2 pipeline starter

…cript_hgtseq bytesize transcript hgtseq

Explain we don't want MD5 checksums for `versions.yml`

…nf-core Tutorial: using nf-core/configs in custom workflows

bytesize transcript pgdb

Add Nextflow Mail docs caveat to getting started page

Basics sept

Co-authored-by: Phil Ewels <[email protected]>

- fix small typos

Link to how to install nf-core

…e-checkout-dev fixes nf-core#1725

…rial Update DSL2 module tutorial

updated new pipeline docs (issue nf-core#1615)

Hackathon23

Modified black and linting sections, added new prettier section

docs(release_checklist): Add code name generator settings

Supersedes nf-core#1682

Add nf-core governance page

Update docs for adding new pipelines.

Update modules to reflect DSL2

Add nf-core/clipseq example to publication credit guidelines

Auto linting fix

another linting error

…_upstream_merge # Conflicts: # ignored_repos.ini # includes/footer.php # includes/header.php # markdown/about.md # markdown/publications.md

Last upstream merge

* main: Update README.md

Pipeline results

Added the grant number

Added Cibin

…arding.

Result preview: force to use https to access S3 in Sanger to avoid url forwarding

Aws sdk upgrade

* main: (328 commits) update npm package name update some meta data for npm package json file upgrade aws-sdk to the latest version 2.1423.0 from 2.994.0 no need to check the region for Sanger S3 [automated] Fix linting with Prettier typo force to use https to access S3 in Sanger to avoid http to https forwarding. Update ignored_repos.ini Add link for Guoying Add Guoying details Fix formatting for Cibin change the last release link to github fix the link url for the last release in the pipeline stats panel Link for Cibin Added Cibin Added the grant number [automated] Fix linting with Prettier disable the same page to preview small files for now. change the result folder logo size change the aws logo to a folder tree for the pipeline results ... # Conflicts: # package-lock.json # package.json

…ce44fbc67699574 [Snyk] Upgrade leaflet from 1.7.1 to 1.9.4

* main: (329 commits) update npm package name update some meta data for npm package json file upgrade aws-sdk to the latest version 2.1423.0 from 2.994.0 no need to check the region for Sanger S3 [automated] Fix linting with Prettier typo force to use https to access S3 in Sanger to avoid http to https forwarding. Update ignored_repos.ini Add link for Guoying Add Guoying details Fix formatting for Cibin change the last release link to github fix the link url for the last release in the pipeline stats panel Link for Cibin Added Cibin Added the grant number [automated] Fix linting with Prettier disable the same page to preview small files for now. change the result folder logo size change the aws logo to a folder tree for the pipeline results ...

…f114e19f533327d [Snyk] Upgrade datatables.net-bs5 from 1.11.2 to 1.13.4

…ted this page now.

Commits on Jul 11, 2023

Ignore repo "website"

ewels authored Jul 11, 2023

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Remove mermaid for governance page #1900

Remove mermaid for governance page #1900

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