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Update DOI for the just accepted paper
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ntthung committed Aug 31, 2022
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6 changes: 4 additions & 2 deletions Paper-code.Rmd
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# Introduction and Preparations

This document details the process of producing the results presented in *Droughts, Pluvials, and Wet Season Timing across the Chao Phraya River Basin: a 254-Year Monthly Reconstruction from Tree Rings and $\delta^{18}O$* by Nguyen et al. (2022).
This document details the process of producing the results presented in the following paper:

Nguyen, H. T. T., Galelli, S., Xu, C., & Buckley, B. M. (2022). Droughts, Pluvials, and Wet Season Timing across the Chao Phraya River Basin: A 254-Year Monthly Reconstruction from Tree Rings and δ<sup>18</sup>O. *Geophysical Research Letters*. https://doi.org/10.1029/2022GL100442

To reproduce the results, please do the following:

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- Follow the written details below and run the code chunks one by one.
- The main reconstruction step with `mbr` should be run on a computing clusters. It still works on a desktop or laptop, but will take much longer, so you may need to change the genetic algorithm settings (more explanations later).

For quick access to the final results please see the `.csv` files in `results/`. This folder is organized by the tributaries.
For quick access to the final results please see the `.csv` files in `results/`. In this folder, the GA outputs are organized by subfolders for the tributaries, and the final reconstruction results are in `results/` itself.

The code utilities to support the main code are stored in the folder `R/`. We need to load them first before running the main code.

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17 changes: 10 additions & 7 deletions Paper-code.html
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<meta name="author" content="Hung Nguyen" />

<meta name="date" content="2022-08-23" />
<meta name="date" content="2022-08-31" />

<title>Chao Phraya Monthly Streamflow Reconstruction</title>

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<div id="postamble" data-toggle="wy-nav-shift" class="status">
<p class="author"><span class="glyphicon glyphicon-user"></span> Hung
Nguyen</p>
<p class="date"><span class="glyphicon glyphicon-calendar"></span> 2022-08-23</p>
<p class="date"><span class="glyphicon glyphicon-calendar"></span> 2022-08-31</p>
</div>
</div>

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<div id="introduction-and-preparations" class="section level1">
<h1>Introduction and Preparations</h1>
<p>This document details the process of producing the results presented
in <em>Droughts, Pluvials, and Wet Season Timing across the Chao Phraya
River Basin: a 254-Year Monthly Reconstruction from Tree Rings and <span class="math inline">\(\delta^{18}O\)</span></em> by Nguyen et
al. (2022).</p>
in the following paper:</p>
<p>Nguyen, H. T. T., Galelli, S., Xu, C., &amp; Buckley, B. M. (2022).
Droughts, Pluvials, and Wet Season Timing across the Chao Phraya River
Basin: A 254-Year Monthly Reconstruction from Tree Rings and
δ<sup>18</sup>O. <em>Geophysical Research Letters</em>. <a href="https://doi.org/10.1029/2022GL100442" class="uri">https://doi.org/10.1029/2022GL100442</a></p>
<p>To reproduce the results, please do the following:</p>
<ul>
<li>This code requires R 4.1.0 and above.</li>
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settings (more explanations later).</li>
</ul>
<p>For quick access to the final results please see the
<code>.csv</code> files in <code>results/</code>. This folder is
organized by the tributaries.</p>
<code>.csv</code> files in <code>results/</code>. In this folder, the GA
outputs are organized by subfolders for the tributaries, and the final
reconstruction results are in <code>results/</code> itself.</p>
<p>The code utilities to support the main code are stored in the folder
<code>R/</code>. We need to load them first before running the main
code.</p>
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