edit pkgdown.yml; fix #30; fix #31

.Rbuildignore

@@ -11,3 +11,4 @@
 ^pkgdown/_pkgdown\.yml$
 ^pkgdown$
 ^codecov\.yml$
+^README\.html$

.gitignore

@@ -5,3 +5,5 @@
 .DS_Store
 inst/doc
 docs
+
+README.html

DESCRIPTION

@@ -32,7 +32,7 @@ Suggests:
 Encoding: UTF-8
 Language: en-GB
 LazyData: true
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Roxygen: list(markdown = TRUE)
 URL: https://nutriverse.io/sleacr/,https://github.com/nutriverse/sleacr
 BugReports: https://github.com/nutriverse/sleacr/issues

README.Rmd

@@ -29,7 +29,7 @@ In the recent past, measurement of coverage has been mainly through two-stage cl
 
 ## Installation
 
-The `sleacr` package is not yet available on [CRAN](https://cran.r-project.org) but can be installed from the [Nutriverse R universe](https://nutriverse.r-universe.dev) as follows:
+The `sleacr` package is not yet available on [CRAN](https://cran.r-project.org) but can be installed from the [nutriverse R Universe](https://nutriverse.r-universe.dev) as follows:
 
 ```{r install, echo = TRUE, eval = FALSE}
 install.packages(
@@ -60,5 +60,5 @@ citation("sleacr")
 
 Feedback, bug reports, and feature requests are welcome; file issues or seek support [here](https://github.com/nutriverse/sleacr/issues). If you would like to contribute to the package, please see our [contributing guidelines](https://nutriverse.io/sleacr/CONTRIBUTING.html).
 
-This project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.
+This project is released with a [Contributor Code of Conduct](https://nutriverse.io/sleacr/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.
 

README.md

@@ -35,7 +35,7 @@ functions for use in conducting a SLEAC assessment.
 
 The `sleacr` package is not yet available on
 [CRAN](https://cran.r-project.org) but can be installed from the
-[Nutriverse R universe](https://nutriverse.r-universe.dev) as follows:
+[nutriverse R Universe](https://nutriverse.r-universe.dev) as follows:
 
 ``` r
 install.packages(
@@ -51,12 +51,12 @@ sampling, data collection, and data analysis of a SLEAC survey. The
 current version of the `sleacr` package currently provides the
 following:
 
-- Functions to calculate the sample size needed for a SLEAC survey;
+  - Functions to calculate the sample size needed for a SLEAC survey;
 
-- Functions to draw a stage 1 sample for a SLEAC survey;
+  - Functions to draw a stage 1 sample for a SLEAC survey;
 
-- Functions to determine the performance of chosen classifier cut-offs
-  for analysis of SLEAC survey data.
+  - Functions to determine the performance of chosen classifier cut-offs
+    for analysis of SLEAC survey data.
 
 ## Citation
 
@@ -92,5 +92,5 @@ would like to contribute to the package, please see our [contributing
 guidelines](https://nutriverse.io/sleacr/CONTRIBUTING.html).
 
 This project is released with a [Contributor Code of
-Conduct](https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html).
-By contributing to this project, you agree to abide by its terms.
+Conduct](https://nutriverse.io/sleacr/CODE_OF_CONDUCT.html). By
+contributing to this project, you agree to abide by its terms.

pkgdown/_pkgdown.yml

@@ -2,33 +2,27 @@ title: sleacr
 
 url: https://nutriverse.io/sleacr/
 
+development:
+  mode: auto
+
 template:
   bootstrap: 5
-  bootswatch: cosmo
-  theme: haddock
-  ganalytics: UA-102485058-6
+  bootswatch: pulse
+  theme: breeze-light
+  ganalytics: G-8JY8XQC801
+  bslib:
+    pkgdown-nav-height: 100px
 
 navbar:
   bg: success
   type: light
   structure:
-    left:
-    - home
-    - intro
-    - reference
-    - articles
-    - news
-    right:
-    - mastodon
-    - linkedin
-    - github
+    left:  [home, intro, reference, articles, news]
+    right: [search, mastodon, github]
   components:
     mastodon:
       icon: fab fa-mastodon fa-lg
-      href: https://fosstodon.org/@katilingban
-    linkedin:
-      icon: fab fa-linkedin fa-lg
-      href: https://www.linkedin.com/company/katilingban
+      href: https://fosstodon.org/@nutriverse
 
 home:
   links:
@@ -37,34 +31,34 @@ home:
     href: https://www.fantaproject.org/sites/default/files/resources/SQUEAC-SLEAC-Technical-Reference-Oct2012_0.pdf
 
 reference:
-- title: Sample size estimation
-  contents:
-  - get_binom_hypergeom
-  - get_hypergeom
-  - get_hypergeom_cumulative
-  - get_n
-  - get_d
-  - get_n_cases
-  - get_n_clusters
-- title: Stage 1 sampling
-  contents:
-  - get_sampling_interval
-  - select_random_start
-  - select_sampling_clusters
-  - create_sampling_list
-- title: Coverage classifier
-  contents: classify_coverage
-- title: Tests for SLEAC classifier performance
-  contents:
-  - make_data
-  - run_lqas
-  - simulate_lqas
-  - test_lqas_classifier
-  - get_class_prob
-  - print.lqasClass
-  - plot.lqasSim
-- title: Datasets
-  contents:
-  - village_list
-  - survey_data
+  - title: Sample size estimation
+    contents:
+    - get_binom_hypergeom
+    - get_hypergeom
+    - get_hypergeom_cumulative
+    - get_n
+    - get_d
+    - get_n_cases
+    - get_n_clusters
+  - title: Stage 1 sampling
+    contents:
+    - get_sampling_interval
+    - select_random_start
+    - select_sampling_clusters
+    - create_sampling_list
+  - title: Coverage classifier
+    contents: classify_coverage
+  - title: Tests for SLEAC classifier performance
+    contents:
+    - make_data
+    - run_lqas
+    - simulate_lqas
+    - test_lqas_classifier
+    - get_class_prob
+    - print.lqasClass
+    - plot.lqasSim
+  - title: Datasets
+    contents:
+    - village_list
+    - survey_data