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obophenotype · Apr 1, 2024 · ab53628 · ab53628
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diff --git a/imports/ro_import.owl b/imports/ro_import.owl
diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl
diff --git a/src/ontology/reports/edges.tsv b/src/ontology/reports/edges.tsv
diff --git a/wbbt-base.json b/wbbt-base.json
diff --git a/wbbt-base.obo b/wbbt-base.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: wbbt/releases/2024-01-04/wbbt-base.owl
+data-version: wbbt/releases/2024-04-01/wbbt-base.owl
 date: 19:10:2018 10:30
 saved-by: raymond
 auto-generated-by: OBO-Edit 2.1-beta16

diff --git a/wbbt-base.owl b/wbbt-base.owl
@@ -11,7 +11,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbbt/wbbt-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbbt/releases/2024-01-04/wbbt-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbbt/releases/2024-04-01/wbbt-base.owl"/>
         <obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/WBbt_0000100"/>
         <dc:description>Ontology about the gross anatomy of the C. elegans</dc:description>
         <dc:title>C. elegans Gross Anatomy Ontology</dc:title>

diff --git a/wbbt-full.json b/wbbt-full.json
diff --git a/wbbt-full.obo b/wbbt-full.obo
diff --git a/wbbt-full.owl b/wbbt-full.owl
diff --git a/wbbt-simple.json b/wbbt-simple.json
diff --git a/wbbt.json b/wbbt.json
diff --git a/wbbt.obo b/wbbt.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: releases/2024-01-04
+data-version: releases/2024-04-01
 date: 19:10:2018 10:30
 saved-by: raymond
 auto-generated-by: OBO-Edit 2.1-beta16
@@ -38,11 +38,11 @@ subset: common_anatomy
 subset: upper_level
 xref: AAO:0010841
 xref: AEO:0000000
+xref: BFO:0000004
 xref: BILA:0000000
 xref: BIRNLEX:6
 xref: CARO:0000000
 xref: EHDAA2:0002229
-xref: FBbt:10000000
 xref: FMA:62955
 xref: HAO:0000000
 xref: MA:0000001
@@ -30677,6 +30677,7 @@ id: WBbt:0004939
 name: CEMVR
 def: "Male specific cephalic neurons (programmed cell death in hermaphrodite embryo) open to outside, possible function in male chemotaxis toward hermaphrodite." [ISBN:0-87969-307-X]
 synonym: "lineage name: ABprpaapapp" RELATED []
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0005246 ! CEM
 is_a: WBbt:0007028 ! embryonic cell
 relationship: develops_from WBbt:0006292 ! ABprpaapapp
@@ -30695,6 +30696,7 @@ id: WBbt:0004941
 name: CEMVL
 def: "Male specific cephalic neurons (programmed cell death in hermaphrodite embryo) open to outside, possible function in male chemotaxis toward hermaphrodite." [ISBN:0-87969-307-X]
 synonym: "lineage name: ABplpaapapp" RELATED []
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0005246 ! CEM
 is_a: WBbt:0007028 ! embryonic cell
 relationship: develops_from WBbt:0006294 ! ABplpaapapp
@@ -30714,6 +30716,7 @@ id: WBbt:0004943
 name: CEMDR
 def: "Male specific cephalic neurons (programmed cell death in hermaphrodite embryo) open to outside, possible function in male chemotaxis toward hermaphrodite." [ISBN:0-87969-307-X]
 synonym: "lineage name: ABarpapaaap" RELATED []
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0005246 ! CEM
 is_a: WBbt:0007028 ! embryonic cell
 relationship: develops_from WBbt:0005992 ! ABarpapaaap
@@ -30731,6 +30734,7 @@ id: WBbt:0004945
 name: CEMDL
 def: "Male specific cephalic neurons (programmed cell death in hermaphrodite embryo) open to outside, possible function in male chemotaxis toward hermaphrodite." [ISBN:0-87969-307-X]
 synonym: "lineage name: ABplaaaaaap" RELATED []
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0005246 ! CEM
 is_a: WBbt:0007028 ! embryonic cell
 relationship: develops_from WBbt:0006541 ! ABplaaaaaap
@@ -35317,6 +35321,7 @@ relationship: part_of WBbt:0008294 ! Z4.aaa hermaphrodite
 id: WBbt:0005728
 name: AC nucleus
 def: "Nucleus of the anchor cell." [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008463 ! Z1.ppp (5R) or Z4.aaa (5L) nucleus
 relationship: part_of WBbt:0004522 ! anchor cell
@@ -35368,6 +35373,7 @@ name: hyp7 syncytium
 def: "entire syncytium of hyp7" [WB:pws]
 synonym: "hyp7" RELATED []
 xref: WB:pws
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0007846 ! hypodermal cell
 is_a: WBbt:0008074 ! syncytium
 relationship: develops_from WBbt:0008069 ! hyp7 precursor cell
@@ -42541,6 +42547,7 @@ is_a: WBbt:0005773 ! rectum
 id: WBbt:0006796
 name: germ cell
 def: "a cell, of either sex, directly concerned in the production of a new organism." [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0004017 ! Cell
 relationship: develops_from WBbt:0006849 ! germline precursor cell
 
@@ -48858,6 +48865,7 @@ is_obsolete: true
 id: WBbt:0007863
 name: B_alpha nucleus
 def: "nucleus of pedigree B_alpha" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008459 ! B.alaa or B.araa nucleus
 relationship: part_of WBbt:0008506 ! B_alpha
@@ -48866,6 +48874,7 @@ relationship: part_of WBbt:0008506 ! B_alpha
 id: WBbt:0007864
 name: B_beta nucleus
 def: "nucleus of pedigree B_beta" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008459 ! B.alaa or B.araa nucleus
 relationship: part_of WBbt:0008507 ! B_beta
@@ -48890,6 +48899,7 @@ relationship: part_of WBbt:0008498 ! B_alpha.r
 id: WBbt:0007867
 name: B_delta nucleus
 def: "nucleus of pedigree B_delta" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008460 ! B.alpp or B.arpp nucleus
 relationship: part_of WBbt:0008451 ! B_delta
@@ -48898,6 +48908,7 @@ relationship: part_of WBbt:0008451 ! B_delta
 id: WBbt:0007868
 name: B_gamma nucleus
 def: "nucleus of pedigree B_gamma" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008460 ! B.alpp or B.arpp nucleus
 relationship: part_of WBbt:0007830 ! B_gamma
@@ -48978,6 +48989,7 @@ is_obsolete: true
 id: WBbt:0007879
 name: P1 nucleus
 def: "nucleus of pedigree P1, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008453 ! ABplapaapp or ABprapaapp nucleus
 relationship: part_of WBbt:0006770 ! P1
@@ -48986,6 +48998,7 @@ relationship: part_of WBbt:0006770 ! P1
 id: WBbt:0007880
 name: P2 nucleus
 def: "nucleus of pedigree P2, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008453 ! ABplapaapp or ABprapaapp nucleus
 relationship: part_of WBbt:0006771 ! P2
@@ -49000,6 +49013,7 @@ is_obsolete: true
 id: WBbt:0007882
 name: P3 nucleus
 def: "nucleus of pedigree P3, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008455 ! ABprappaaa or ABplappaaa nucleus
 relationship: part_of WBbt:0006772 ! P3
@@ -49008,6 +49022,7 @@ relationship: part_of WBbt:0006772 ! P3
 id: WBbt:0007883
 name: P4 nucleus
 def: "nucleus of pedigree P4, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008455 ! ABprappaaa or ABplappaaa nucleus
 relationship: part_of WBbt:0006773 ! P4
@@ -49038,6 +49053,7 @@ is_obsolete: true
 id: WBbt:0007887
 name: P5 nucleus
 def: "nucleus of pedigree P5, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008456 ! ABprappaap or ABplappaap nucleus
 relationship: part_of WBbt:0006774 ! P5
@@ -49046,6 +49062,7 @@ relationship: part_of WBbt:0006774 ! P5
 id: WBbt:0007888
 name: P6 nucleus
 def: "nucleus of pedigree P6, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008456 ! ABprappaap or ABplappaap nucleus
 relationship: part_of WBbt:0006775 ! P6
@@ -49060,6 +49077,7 @@ is_obsolete: true
 id: WBbt:0007890
 name: P7 nucleus
 def: "nucleus of pedigree P7, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008457 ! ABprappapp or ABplappapp nucleus
 relationship: part_of WBbt:0006776 ! P7
@@ -49068,6 +49086,7 @@ relationship: part_of WBbt:0006776 ! P7
 id: WBbt:0007891
 name: P8 nucleus
 def: "nucleus of pedigree P8, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008457 ! ABprappapp or ABplappapp nucleus
 relationship: part_of WBbt:0006777 ! P8
@@ -49082,6 +49101,7 @@ is_obsolete: true
 id: WBbt:0007893
 name: P9 nucleus
 def: "nucleus of pedigree P9, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008458 ! ABprapapap or ABplapapap nucleus
 relationship: part_of WBbt:0006778 ! P9
@@ -49090,6 +49110,7 @@ relationship: part_of WBbt:0006778 ! P9
 id: WBbt:0007894
 name: P10 nucleus
 def: "nucleus of pedigree P10, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008458 ! ABprapapap or ABplapapap nucleus
 relationship: part_of WBbt:0006779 ! P10
@@ -49104,6 +49125,7 @@ is_obsolete: true
 id: WBbt:0007896
 name: P11 nucleus
 def: "nucleus of pedigree P11, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008462 ! ABplapappa or ABprapappa nucleus
 relationship: part_of WBbt:0004410 ! P11
@@ -49112,6 +49134,7 @@ relationship: part_of WBbt:0004410 ! P11
 id: WBbt:0007897
 name: P12 nucleus
 def: "nucleus of pedigree P12, post-embryonic" [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008462 ! ABplapappa or ABprapappa nucleus
 relationship: part_of WBbt:0004409 ! P12
@@ -50090,6 +50113,7 @@ is_obsolete: true
 id: WBbt:0008033
 name: hyp8 nucleus
 def: "nucleus of hyp8 cell." [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008461 ! ABplpppapap or ABprpppapap nucleus
 relationship: part_of WBbt:0004381 ! hyp8
@@ -50099,6 +50123,7 @@ relationship: part_of WBbt:0008354 ! male tail tip cell
 id: WBbt:0008034
 name: hyp9 nucleus
 def: "nucleus of hyp9 cell." [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008461 ! ABplpppapap or ABprpppapap nucleus
 relationship: part_of WBbt:0004380 ! hyp9
@@ -52249,6 +52274,7 @@ is_a: WBbt:0008074 ! syncytium
 id: WBbt:0008355
 name: AVFL nucleus
 def: "nucleus of cell AVFL." [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008452 ! W.aaa or P1.aaaa nucleus
 relationship: part_of WBbt:0005657 ! AVFL
@@ -52257,6 +52283,7 @@ relationship: part_of WBbt:0005657 ! AVFL
 id: WBbt:0008356
 name: AVFR nucleus
 def: "nucleus of cell AVFR." [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006803 ! Nucleus
 relationship: develops_from WBbt:0008452 ! W.aaa or P1.aaaa nucleus
 relationship: part_of WBbt:0005658 ! AVFR
@@ -52342,27 +52369,31 @@ is_a: WBbt:0008366 ! gonadal primordium
 id: WBbt:0008369
 name: ABarpapaaap hermaphrodite
 def: "cell born in embryo that dies in hermaphrodite but counterpart becomes CEMDR in male." [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006925 ! apoptotic cell
 relationship: develops_from WBbt:0005992 ! ABarpapaaap
 
 [Term]
 id: WBbt:0008370
 name: ABplaaaaaap hermaphrodite
 def: "cell that is born in embryo, dies in hermaphrodite but counter part becomes CDMDL in male." [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006925 ! apoptotic cell
 relationship: develops_from WBbt:0006541 ! ABplaaaaaap
 
 [Term]
 id: WBbt:0008371
 name: ABplpaapapp hermaphrodite
 def: "cell that is born in embryo, dies in hermaphrodite, but counterpart becomes CEMVL in male." [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006925 ! apoptotic cell
 relationship: develops_from WBbt:0006294 ! ABplpaapapp
 
 [Term]
 id: WBbt:0008372
 name: ABprpaapapp hermaphrodite
 def: "cell that is born in embryo, dies in hermaphrodite, but counterpart becomes CEMVR in male." [WB:rynl]
+is_a: UBERON:0001062 ! anatomical entity
 is_a: WBbt:0006925 ! apoptotic cell
 relationship: develops_from WBbt:0006292 ! ABprpaapapp
 
@@ -54494,6 +54525,7 @@ property_value: IAO:0000116 "A bearer can have many dependents, and its dependen
 property_value: IAO:0000118 "bearer_of" xsd:string
 property_value: IAO:0000118 "is bearer of" xsd:string
 property_value: RO:0001900 RO:0001901
+property_value: seeAlso https://github.com/oborel/obo-relations/pull/284 xsd:string
 is_inverse_functional: true
 
 [Typedef]
@@ -55630,6 +55662,7 @@ property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
 property_value: IAO:0000117 https://orcid.org/0000-0002-7073-9172
 property_value: IAO:0000117 https://orcid.org/0000-0003-1980-3228
 is_transitive: true
+is_a: RO:0002254 ! has developmental contribution from
 is_a: RO:0002258 ! developmentally preceded by
 inverse_of: RO:0002203 ! develops into