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NTR-PVALB-GABAergic-neurons-of-the-substantia-nigra #2832

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NTR-PVALB-GABAergic-neurons-of-the-substantia-nigra #2832

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931153b
NTR-PVALB-GABAergic-neurons-of-the-substantia-nigra
AvolaAmg Dec 3, 2024
4e31a22
Merge branch 'master' into NTR-PVALB-GABAergic-neurons-of-the-substan…
AvolaAmg Dec 4, 2024
5231a62
NTR-PVALB-GABAergic-neurons-of-the-substantia-nigra
AvolaAmg Dec 4, 2024
b95c388
Merge branch 'NTR-PVALB-GABAergic-neurons-of-the-substantia-nigra' of…
AvolaAmg Dec 4, 2024
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2 changes: 1 addition & 1 deletion src/mappings/zfa.sssom.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ ZFA:0005238 juxtaglomerular cell semapv:crossSpeciesExactMatch CL:0000648 kidney
ZFA:0005239 micropylar cell semapv:crossSpeciesExactMatch CL:0007022 micropylar cell semapv:UnspecifiedMatching
ZFA:0005240 Kolmer-Agduhr neuron semapv:crossSpeciesExactMatch CL:0005007 Kolmer-Agduhr neuron semapv:UnspecifiedMatching
ZFA:0005241 polychromatophilic erythroblast semapv:crossSpeciesExactMatch CL:0000550 polychromatophilic erythroblast semapv:UnspecifiedMatching
ZFA:0005242 multi-ciliated epithelial cell semapv:crossSpeciesExactMatch CL:0005012 multi-ciliated epithelial cell semapv:UnspecifiedMatching
ZFA:0005242 multi-ciliated epithelial cell semapv:crossSpeciesExactMatch CL:0005012 multiciliated epithelial cell semapv:UnspecifiedMatching
ZFA:0005243 single ciliated epithelial cell semapv:crossSpeciesExactMatch CL:0005013 single ciliated epithelial cell semapv:UnspecifiedMatching
ZFA:0005244 auditory epithelial support cell semapv:crossSpeciesExactMatch CL:0005014 auditory epithelial supporting cell semapv:UnspecifiedMatching
ZFA:0005245 xanthoblast semapv:crossSpeciesExactMatch CL:0005002 xanthoblast semapv:UnspecifiedMatching
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48 changes: 47 additions & 1 deletion src/ontology/cl-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3090,8 +3090,12 @@ Declaration(Class(obo:CL_4042034))
Declaration(Class(obo:CL_4042035))
Declaration(Class(obo:CL_4042036))
Declaration(Class(obo:CL_4042037))
Declaration(Class(obo:CL_4042038))
Declaration(Class(obo:CL_4042039))
Declaration(Class(obo:CL_4042040))
Declaration(Class(obo:CL_4042041))
Declaration(Class(obo:CL_4042042))
Declaration(Class(obo:CL_4042043))
Declaration(Class(obo:CL_4047006))
Declaration(Class(obo:CL_4047007))
Declaration(Class(obo:CL_4047011))
Expand Down Expand Up @@ -3241,6 +3245,7 @@ Declaration(Class(obo:UBERON_0000424))
Declaration(Class(obo:UBERON_0001004))
Declaration(Class(obo:UBERON_0001335))
Declaration(Class(obo:UBERON_0001786))
Declaration(Class(obo:UBERON_0001875))
Declaration(Class(obo:UBERON_0001881))
Declaration(Class(obo:UBERON_0002197))
Declaration(Class(obo:UBERON_0002222))
Expand Down Expand Up @@ -31164,8 +31169,8 @@ EquivalentClasses(obo:CL_4030033 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeV
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18757316") Annotation(oboInOwl:hasDbXref "PMID:21364219") Annotation(oboInOwl:hasDbXref "PMID:34044844") Annotation(oboInOwl:hasDbXref "PMID:37834236") obo:IAO_0000115 obo:CL_4030034 "A multiciliated epithelial cell located in the respiratory tract epithelium, characterized by a columnar shape and motile cilia on its apical surface. This cell develops through a highly orchestrated process, transitioning from a basal progenitor via an intermediate deuterosomal cell stage that generates centrioles essential for ciliogenesis.")
AnnotationAssertion(terms:date obo:CL_4030034 "2023-01-25T11:06:01Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030034 "ciliated cell of the respiratory tract")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030034 "respiratory multiciliated cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030034 "respiratory ciliated cell")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030034 "respiratory multiciliated cell")
AnnotationAssertion(rdfs:label obo:CL_4030034 "respiratory tract multiciliated cell")
EquivalentClasses(obo:CL_4030034 ObjectIntersectionOf(obo:CL_0000075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0031514) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0010007)))
SubClassOf(obo:CL_4030034 ObjectSomeValuesFrom(obo:RO_0002207 obo:CL_4033044))
Expand Down Expand Up @@ -32878,6 +32883,15 @@ SubClassOf(obo:CL_4042037 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002435
SubClassOf(obo:CL_4042037 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))
SubClassOf(obo:CL_4042037 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000015665))

# Class: obo:CL_4042038 (pvalb GABAergic neuron of the striatum)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17177263") Annotation(oboInOwl:hasDbXref "PMID:37843977") obo:IAO_0000115 obo:CL_4042038 "An interneuron of the substantia nigra that expresses parvalbumin. This neuron is involved in motor control and behaviour.")
AnnotationAssertion(terms:contributor obo:CL_4042038 <https://orcid.org/0000-0002-0098-8958>)
AnnotationAssertion(terms:date obo:CL_4042038 "2024-12-03T19:10:41Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37843977") oboInOwl:hasNarrowSynonym obo:CL_4042038 "SNr-PV+")
AnnotationAssertion(rdfs:label obo:CL_4042038 "pvalb GABAergic neuron of the striatum"@en)
SubClassOf(obo:CL_4042038 obo:CL_0002613)

# Class: obo:CL_4042039 (caudal ganglionic eminence derived neuron)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:12593982") Annotation(oboInOwl:hasDbXref "PMID:12637172") Annotation(oboInOwl:hasDbXref "PMID:20130169") Annotation(oboInOwl:hasDbXref "https://www.ncbi.nlm.nih.gov/books/NBK98190/") obo:IAO_0000115 obo:CL_4042039 "A neuron of the central nervous system that develops from a caudal ganglionic eminence.")
Expand All @@ -32899,6 +32913,38 @@ SubClassOf(obo:CL_4042040 obo:CL_0000540)
SubClassOf(obo:CL_4042040 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002420))
SubClassOf(obo:CL_4042040 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061535))

# Class: obo:CL_4042041 (pvalb GABAergic neuron of the basal ganglia)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:16131542") obo:IAO_0000115 obo:CL_4042041 "An interneuron of the central nervous system with its soma in the basal ganglia expressing parvalbumin. This neuron is involved in motor control and behaviour.")
AnnotationAssertion(terms:contributor obo:CL_4042041 <https://orcid.org/0000-0002-0098-8958>)
AnnotationAssertion(terms:date obo:CL_4042041 "2024-12-04T16:11:11Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:16131542") rdfs:comment obo:CL_4042041 "Developmental deficits in pvalb GABAergic neurons of the basal ganglia are associated to with Tourette Syndrome.")
AnnotationAssertion(rdfs:label obo:CL_4042041 "pvalb GABAergic neuron of the basal ganglia"@en)
SubClassOf(obo:CL_4042041 obo:CL_0011005)
SubClassOf(obo:CL_4042041 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0002420))
SubClassOf(obo:CL_4042041 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000013502))

# Class: obo:CL_4042042 (pvalb GABAergic neuron of the globus pallidus)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23044920") Annotation(oboInOwl:hasDbXref "PMID:26905595") Annotation(oboInOwl:hasDbXref "PMID:29917235") obo:IAO_0000115 obo:CL_4042042 "A GABAergic neuron of the central nervous system expressing parvalbumin with soma location in a globus pallidus.")
AnnotationAssertion(terms:contributor obo:CL_4042042 <https://orcid.org/0000-0002-0098-8958>)
AnnotationAssertion(terms:date obo:CL_4042042 "2024-12-04T16:15:02Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23044920") Annotation(oboInOwl:hasDbXref "PMID:26905595") Annotation(oboInOwl:hasDbXref "PMID:29917235") rdfs:comment obo:CL_4042042 "Pvalb GABAergic neuron compromise 40% of all the interneurons in the globus pallidus (GP). They are predominantly localised in the globus pallidus external segment. They exhibit fast-firing spontaneous acting, project to the subthalamic nucleus and the internal segment of the GP and also innervate the striatum.")
AnnotationAssertion(rdfs:label obo:CL_4042042 "pvalb GABAergic neuron of the globus pallidus"@en)
SubClassOf(obo:CL_4042042 obo:CL_0011005)
SubClassOf(obo:CL_4042042 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001875))
SubClassOf(obo:CL_4042042 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000013502))

# Class: obo:CL_4042043 (MEIS2 expressing GABAergic neuron of the thalamus)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:39048816") obo:IAO_0000115 obo:CL_4042043 "A GABAergic neuron expressing homeobox protein Meis2 located in a thalamus.")
AnnotationAssertion(terms:contributor obo:CL_4042043 <https://orcid.org/0000-0002-0098-8958>)
AnnotationAssertion(terms:date obo:CL_4042043 "2024-12-04T16:38:28Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:CL_4042043 "MEIS2 expressing GABAergic neuron of the thalamus"@en)
SubClassOf(obo:CL_4042043 obo:CL_0011005)
SubClassOf(obo:CL_4042043 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0010225))
SubClassOf(obo:CL_4042043 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000010317))

# Class: obo:CL_4047006 (fetal artery endothelial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_4047006 "An endothelial cell that lines an artery in the fetal circulatory system.")
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