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Adding two new terms to CHEBI slim for uPheno
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matentzn committed Sep 4, 2024
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52 changes: 50 additions & 2 deletions chebi_slim.obo
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
format-version: 1.2
data-version: chebi/obophenotype/releases/2024-08-02/chebi_slim.owl
data-version: chebi/obophenotype/releases/2024-09-04/chebi_slim.owl
subsetdef: 1_STAR ""
subsetdef: 2_STAR ""
subsetdef: 3_STAR ""
synonymtypedef: BRAND_NAME ""
synonymtypedef: INN ""
synonymtypedef: IUPAC_NAME ""
ontology: chebi/obophenotype/chebi_slim
property_value: owl:versionInfo "2024-08-02" xsd:string
property_value: owl:versionInfo "2024-09-04" xsd:string

[Term]
id: CHEBI:100147
Expand Down Expand Up @@ -61615,6 +61615,34 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "12.01070" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "12.00000" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "[C]" xsd:string

[Term]
id: CHEBI:27601
name: pteridine
namespace: chebi_ontology
alt_id: CHEBI:26372
alt_id: CHEBI:8626
subset: 3_STAR
synonym: "1,3,5,8-tetraazanaphthalene" RELATED [ChemIDplus]
synonym: "azinepurine" RELATED [ChemIDplus]
synonym: "Pteridine" EXACT [KEGG_COMPOUND]
synonym: "pteridine" EXACT IUPAC_NAME [IUPAC]
xref: Beilstein:115341 {source="Beilstein"}
xref: CAS:91-18-9 {source="ChemIDplus"}
xref: CAS:91-18-9 {source="KEGG COMPOUND"}
xref: Gmelin:364077 {source="Gmelin"}
xref: KEGG:C07581
is_a: CHEBI:26373 ! pteridines
is_a: CHEBI:35570 ! mancude organic heterobicyclic parent
is_a: CHEBI:50893 ! azaarene
is_a: CHEBI:52362 ! ortho-fused heteroarene
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "C6H4N4" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C6H4N4/c1-2-9-6-5(8-1)3-7-4-10-6/h1-4H" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchikey "CPNGPNLZQNNVQM-UHFFFAOYSA-N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "132.12292" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "132.04360" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "c1cnc2ncncc2n1" xsd:string

[Term]
id: CHEBI:27612
name: hydantoin
Expand Down Expand Up @@ -156154,6 +156182,26 @@ subset: 3_STAR
synonym: "ribonucleoside bisphosphates" RELATED [ChEBI]
is_a: CHEBI:37123 ! nucleoside bisphosphate

[Term]
id: CHEBI:61089
name: 4-methyl-5-pentylbenzene-1,3-diol
namespace: chebi_ontology
def: "A resorcinol having methyl and pentyl groups at positions 4 and 5 respectively." []
subset: 3_STAR
synonym: "4-methyl-5-pentylbenzene-1,3-diol" EXACT IUPAC_NAME [IUPAC]
xref: PMID:17027864 {source="Europe PMC"}
xref: PMID:18252726 {source="SUBMITTER"}
xref: Reaxys:10668241 {source="Reaxys"}
is_a: CHEBI:33572 ! resorcinols
relationship: has_role CHEBI:35610 ! antineoplastic agent
property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/formula "C12H18O2" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchi "InChI=1S/C12H18O2/c1-3-4-5-6-10-7-11(13)8-12(14)9(10)2/h7-8,13-14H,3-6H2,1-2H3" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/inchikey "CUXFFBBWEJOYAI-UHFFFAOYSA-N" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/mass "194.27010" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "194.13068" xsd:string
property_value: http://purl.obolibrary.org/obo/chebi/smiles "CCCCCc1cc(O)cc(O)c1C" xsd:string

[Term]
id: CHEBI:61109
name: pyrimidine nucleotide-sugar
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56 changes: 54 additions & 2 deletions chebi_slim.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/chebi/obophenotype/chebi_slim.owl>
<http://purl.obolibrary.org/obo/chebi/obophenotype/releases/2024-08-02/chebi_slim.owl>
Annotation(owl:versionInfo "2024-08-02")
<http://purl.obolibrary.org/obo/chebi/obophenotype/releases/2024-09-04/chebi_slim.owl>
Annotation(owl:versionInfo "2024-09-04")

Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_100147>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10022>))
Expand Down Expand Up @@ -2524,6 +2524,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27573>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27577>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27584>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27594>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27601>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27612>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27617>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_2762>))
Expand Down Expand Up @@ -6748,6 +6749,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_61057>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_61073>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_61078>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_61079>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_61089>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_61109>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_61115>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_61120>))
Expand Down Expand Up @@ -73102,6 +73104,35 @@ SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27594> <http://purl.obolibrary.
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27594> <http://purl.obolibrary.org/obo/CHEBI_33306>)
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27594> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_33937>))

# Class: <http://purl.obolibrary.org/obo/CHEBI_27601> (pteridine)

AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/charge> <http://purl.obolibrary.org/obo/CHEBI_27601> "0")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/formula> <http://purl.obolibrary.org/obo/CHEBI_27601> "C6H4N4")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/inchi> <http://purl.obolibrary.org/obo/CHEBI_27601> "InChI=1S/C6H4N4/c1-2-9-6-5(8-1)3-7-4-10-6/h1-4H")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/inchikey> <http://purl.obolibrary.org/obo/CHEBI_27601> "CPNGPNLZQNNVQM-UHFFFAOYSA-N")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/mass> <http://purl.obolibrary.org/obo/CHEBI_27601> "132.12292")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/monoisotopicmass> <http://purl.obolibrary.org/obo/CHEBI_27601> "132.04360")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/smiles> <http://purl.obolibrary.org/obo/CHEBI_27601> "c1cnc2ncncc2n1")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId> <http://purl.obolibrary.org/obo/CHEBI_27601> "CHEBI:26372")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId> <http://purl.obolibrary.org/obo/CHEBI_27601> "CHEBI:8626")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "Beilstein") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_27601> "Beilstein:115341")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "ChemIDplus") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_27601> "CAS:91-18-9")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "KEGG COMPOUND") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_27601> "CAS:91-18-9")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "Gmelin") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_27601> "Gmelin:364077")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_27601> "KEGG:C07581")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "KEGG_COMPOUND") <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CHEBI_27601> "Pteridine")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "IUPAC") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/chebi#IUPAC_NAME>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CHEBI_27601> "pteridine")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CHEBI_27601> "chebi_ontology")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ChemIDplus") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_27601> "1,3,5,8-tetraazanaphthalene")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ChemIDplus") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_27601> "azinepurine")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/CHEBI_27601> "CHEBI:27601")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_27601> <http://purl.obolibrary.org/obo/chebi#3_STAR>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_27601> "pteridine")
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27601> <http://purl.obolibrary.org/obo/CHEBI_26373>)
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27601> <http://purl.obolibrary.org/obo/CHEBI_35570>)
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27601> <http://purl.obolibrary.org/obo/CHEBI_50893>)
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27601> <http://purl.obolibrary.org/obo/CHEBI_52362>)

# Class: <http://purl.obolibrary.org/obo/CHEBI_27612> (hydantoin)

AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/charge> <http://purl.obolibrary.org/obo/CHEBI_27612> "0")
Expand Down Expand Up @@ -171871,6 +171902,27 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_61079> "ribonucleoside bisphosphate")
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_61079> <http://purl.obolibrary.org/obo/CHEBI_37123>)

# Class: <http://purl.obolibrary.org/obo/CHEBI_61089> (4-methyl-5-pentylbenzene-1,3-diol)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_61089> "A resorcinol having methyl and pentyl groups at positions 4 and 5 respectively.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/charge> <http://purl.obolibrary.org/obo/CHEBI_61089> "0")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/formula> <http://purl.obolibrary.org/obo/CHEBI_61089> "C12H18O2")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/inchi> <http://purl.obolibrary.org/obo/CHEBI_61089> "InChI=1S/C12H18O2/c1-3-4-5-6-10-7-11(13)8-12(14)9(10)2/h7-8,13-14H,3-6H2,1-2H3")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/inchikey> <http://purl.obolibrary.org/obo/CHEBI_61089> "CUXFFBBWEJOYAI-UHFFFAOYSA-N")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/mass> <http://purl.obolibrary.org/obo/CHEBI_61089> "194.27010")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/monoisotopicmass> <http://purl.obolibrary.org/obo/CHEBI_61089> "194.13068")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/smiles> <http://purl.obolibrary.org/obo/CHEBI_61089> "CCCCCc1cc(O)cc(O)c1C")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "Europe PMC") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_61089> "PMID:17027864")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "SUBMITTER") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_61089> "PMID:18252726")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "Reaxys") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_61089> "Reaxys:10668241")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "IUPAC") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/chebi#IUPAC_NAME>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CHEBI_61089> "4-methyl-5-pentylbenzene-1,3-diol")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CHEBI_61089> "chebi_ontology")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/CHEBI_61089> "CHEBI:61089")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_61089> <http://purl.obolibrary.org/obo/chebi#3_STAR>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_61089> "4-methyl-5-pentylbenzene-1,3-diol")
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_61089> <http://purl.obolibrary.org/obo/CHEBI_33572>)
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_61089> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_35610>))

# Class: <http://purl.obolibrary.org/obo/CHEBI_61109> (pyrimidine nucleotide-sugar)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_61109> "A nucleotide-sugar whose nucleobase is a pyrimidine.")
Expand Down
2 changes: 2 additions & 0 deletions seed.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -1995,6 +1995,7 @@ CHEBI:27570
CHEBI:27573
CHEBI:27584
CHEBI:27594
CHEBI:27601
CHEBI:27612
CHEBI:27617
CHEBI:2762
Expand Down Expand Up @@ -5267,6 +5268,7 @@ CHEBI:61057
CHEBI:61073
CHEBI:61078
CHEBI:61079
CHEBI:61089
CHEBI:61109
CHEBI:61115
CHEBI:61120
Expand Down

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