Inclusion of a new module: Last_train

oist · Apr 19, 2024 · 6f2ee0b · 6f2ee0b
1 parent 61804e2
commit 6f2ee0b
Showing 1 changed file with 8 additions and 1 deletion.
diff --git a/workflows/pairalign.nf b/workflows/pairalign.nf
@@ -6,6 +6,7 @@
 
 include { ASSEMBLYSCAN           } from '../modules/nf-core/assemblyscan/main'
 include { LAST_LASTDB                 } from '../modules/nf-core/last/lastdb/main'
+include { LAST_TRAIN                 } from '../modules/nf-core/last/train/main'
 include { MULTIQC                } from '../modules/nf-core/multiqc/main'
 include { paramsSummaryMap       } from 'plugin/nf-validation'
 include { paramsSummaryMultiqc   } from '../subworkflows/nf-core/utils_nfcore_pipeline'
@@ -44,8 +45,14 @@ workflow PAIRALIGN {
     )
     ch_multiqc_files = ch_multiqc_files.mix(ASSEMBLYSCAN.out.json.collect{it[1]})
     ch_versions = ch_versions.mix(ASSEMBLYSCAN.out.versions.first())
-
+
+    // MODULE: last-train
     //
+    LAST_TRAIN (
+         ch_samplesheet,
+         LAST_LASTDB.out.index
+    )
+
     // Collate and save software versions
     //
     softwareVersionsToYAML(ch_versions)