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biomisc_julia

collection of miscellaneous command line bioinformatic scripts written in julia for speed

Depedences:

1. julia 1.6.6 or later
2. FASTX
3. BioSequences for the sequence_statistics and argparse_equivalents folders
4. BioStructures for the argparse_equivalents/pdb_corner folder
5. ArgParse for the argparse_equivalents folder
6. Pandas for the text_manipulation folder
7. Plots for contact and distance map creation scripts in argparse_equivalents/pdb_corner
8. Bio3DView & Blink for pdb_3d_chain.jl & pdb_3d_structure.jl (run the scripts using julia -i to open a gui window with the structure)
9. Measures for pdb_to_ramachandran.jl & pdb_to_ramachandran_chain.jl
10. DelimitedFiles for extract_seqs_from_fasta.jl & remove_seqs_from_fasta.jl