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Olga Tsiouri edited this page Dec 22, 2020 · 19 revisions

biomisc_julia

collection of miscellaneous command line bioinformatic scripts written in julia for speed

Depedences:

  1. julia 1.5.2 or later
  2. FASTX
  3. BioSequences for the sequence_statistics and argparse_equivalents folders
  4. BioStructures for the argparse_equivalents/pdb_corner folder
  5. ArgParse for the argparse_equivalents folder
  6. Pandas for the text_manipulation folder
  7. Plots for pdb_chain_create_distance_map.jl and pdb_create_distance_map_between_chains.jl
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