Fixed issue to set mislabelled color in pcawg pan-cancer analysis (close

#247)
openbiox · Jun 6, 2022 · 9aaecf6 · 9aaecf6
1 parent a17b3f5
commit 9aaecf6
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Showing 4 changed files with 7 additions and 5 deletions.
diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION
@@ -1,3 +1,3 @@
-Version: 1.1.7
-Date: 2022-04-13 07:27:25 UTC
-SHA: 5302482f1e4b780ae6311d9196e40ffe64380afe
+Version: 1.1.8
+Date: 2022-06-06 13:21:21 UTC
+SHA: a17b3f5db9bb3614324eddd5a9c3b67e7fab2eff
diff --git a/NEWS.md b/NEWS.md
@@ -1,5 +1,6 @@
 # UCSCXenaShiny 1.1.8
 
+- Fixed issue to set mislabelled color in pcawg pan-cancer analysis (#247, Thanks to Tangjian Li).
 - Fixed issue in querying gene signature in general analysis page (#244).
 - Fixed issue "Radar plot “stemness” does not plot the “ACC” tumor type" (#242).
 

diff --git a/R/vis_pcawg_value.R b/R/vis_pcawg_value.R
@@ -86,7 +86,9 @@ vis_pcawg_dist <- function(Gene = "TP53",
     dplyr::inner_join(pcawg_info, by = "icgc_specimen_id")
 
   # table(pcawg_info$dcc_specimen_type)
-  pcawg_data <- t2 %>% dplyr::select("tpm", "dcc_project_code", "type2", "icgc_specimen_id")
+  pcawg_data <- t2 %>% 
+    dplyr::select("tpm", "dcc_project_code", "type2", "icgc_specimen_id")
+  pcawg_data$type2 <- factor(pcawg_data$type2, c("tumor", "normal"))
 
 
   if (Show.P.value == FALSE) {

diff --git a/XenaShiny.Rproj b/XenaShiny.Rproj
@@ -14,7 +14,6 @@ LaTeX: XeLaTeX
 
 BuildType: Package
 PackageUseDevtools: Yes
-PackageCleanBeforeInstall: Yes
 PackageInstallArgs: --no-multiarch --with-keep.source
 PackageCheckArgs: --as-cran
 PackageRoxygenize: rd,collate,namespace