Merge pull request #712 from opencb/TASK-7038

TASK-7038 - Port Patch 6.2.2 -> 6.3.0 - Xetabase 2.2.2 -> 2.3.0

cellbase-core/src/main/resources/configuration.yml

@@ -106,13 +106,6 @@ download:
   clinvar:
 #    host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/ClinVarFullRelease_2021-07.xml.gz
 #    host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/ClinVarFullRelease_2022-02.xml.gz
-<<<<<<< HEAD
-    host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/ClinVarFullRelease_2022-11.xml.gz
-  clinvarVariation:
-#    host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/clinvar_variation/ClinVarVariationRelease_2021-07.xml.gz
-#    host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/clinvar_variation/ClinVarVariationRelease_2022-02.xml.gz
-    host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/clinvar_variation/ClinVarVariationRelease_2022-11.xml.gz
-=======
 #    host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/ClinVarFullRelease_2022-11.xml.gz
     host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/RCV_xml_old_format/ClinVarFullRelease_2024-05.xml.gz
     version: 2024-05
@@ -122,7 +115,6 @@ download:
 #    host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/clinvar_variation/ClinVarVariationRelease_2022-11.xml.gz
     host: https://ftp.ncbi.nlm.nih.gov/pub/clinvar/xml/VCV_xml_old_format/ClinVarVariationRelease_2024-05.xml.gz
     version: 2024-05
->>>>>>> release-6.2.x
   clinvarSummary:
     host: http://ftp.ncbi.nlm.nih.gov/pub/clinvar/tab_delimited/variant_summary.txt.gz
   clinvarVariationAllele:
@@ -147,15 +139,10 @@ download:
   genomicSuperDups:
     host: http://hgdownload.cse.ucsc.edu/goldenPath
   gwasCatalog:
-<<<<<<< HEAD
-    host: http://resources.opencb.org/opencb/cellbase/data/gwas/gwas_catalog_v1.0.2-associations_e106_r2022-05-17.tsv
-    version: "1.0.2 associations_e106_r2022-05-17"
-=======
     #host: http://resources.opencb.org/opencb/cellbase/data/gwas/gwas_catalog_v1.0.2-associations_e106_r2022-05-17.tsv
     host: "https://ftp.ebi.ac.uk/pub/databases/gwas/releases/2024/05/20/gwas-catalog-associations_ontology-annotated.tsv"
     #version: "1.0.2 associations_e106_r2022-05-17"
     version: "2024-05-20"
->>>>>>> release-6.2.x
   hpo:
     host: https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/phenotype_to_genes.txt
   disgenet:

pom.xml

@@ -25,7 +25,6 @@
         <pycellbase.version>${project.version}</pycellbase.version>
         <java-common-libs.version>5.3.0-SNAPSHOT</java-common-libs.version>
         <biodata.version>3.3.0-SNAPSHOT</biodata.version>
-
         <bionetdb.version>0.1.0</bionetdb.version>
         <jackson.version>2.11.4</jackson.version>
         <jackson-asl.version>1.9.13</jackson-asl.version>