lib: catch the exception, but do not propagate it; instead, continue …

…processing the variant annotation, #TASK-5457
opencb · Jan 16, 2024 · 32a5ecf · 32a5ecf
1 parent 3e4d16b
commit 32a5ecf
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/...src/main/java/org/opencb/cellbase/lib/variant/annotation/VariantAnnotationCalculator.java b/...src/main/java/org/opencb/cellbase/lib/variant/annotation/VariantAnnotationCalculator.java
@@ -611,9 +611,9 @@ private List<VariantAnnotation> runAnnotationProcess(List<Variant> normalizedVar
                         }
                     }
                 } catch (Exception e) {
-                    e.printStackTrace();
+                    variantAnnotation.setDisplayConsequenceType(VariantAnnotationUtils.FUNCTION_UNCERTAIN_VARIANT);
+                    variantAnnotation.setConsequenceTypes(Collections.emptyList());
                     logger.error("Something wrong happened when calculation consequence type for variant " + variant, e);
-                    throw e;
                 }
             }