core: add dbSNP in config file (removed after merging), #TASK-5564

opencb · Aug 10, 2024 · a8d6368 · a8d6368
1 parent 6056655
commit a8d6368
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diff --git a/cellbase-core/src/main/resources/configuration.yml b/cellbase-core/src/main/resources/configuration.yml
@@ -231,6 +231,11 @@ download:
     files:
       GWAS: pub/databases/gwas/releases/2024/04/22/gwas-catalog-associations_ontology-annotated.tsv
       DBSNP: All.vcf.gz
+
+  dbSNP:
+    host: https://ftp.ncbi.nih.gov/snp/latest_release/VCF/GCF_000001405.40.gz
+    version: "156"
+
   pharmGKB:
     host: https://api.pharmgkb.org/v1/download/file/data/
     version: v1

diff --git a/cellbase-core/src/test/resources/configuration.yml b/cellbase-core/src/test/resources/configuration.yml
@@ -235,6 +235,11 @@ download:
     files:
       GWAS: pub/databases/gwas/releases/2024/04/22/gwas-catalog-associations_ontology-annotated.tsv
       DBSNP: All.vcf.gz
+
+  dbSNP:
+    host: https://ftp.ncbi.nih.gov/snp/latest_release/VCF/GCF_000001405.40.gz
+    version: "156"
+
   pharmGKB:
     host: https://api.pharmgkb.org/v1/download/file/data/
     version: v1

diff --git a/cellbase-lib/src/test/resources/configuration.test.yaml b/cellbase-lib/src/test/resources/configuration.test.yaml
@@ -222,6 +222,11 @@ download:
     files:
       GWAS: pub/databases/gwas/releases/2024/04/22/gwas-catalog-associations_ontology-annotated.tsv
       DBSNP: All.vcf.gz
+
+  dbSNP:
+    host: https://ftp.ncbi.nih.gov/snp/latest_release/VCF/GCF_000001405.40.gz
+    version: "156"
+
   pharmGKB:
     host: https://api.pharmgkb.org/v1/download/file/data/
     version: v1